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Relation Between the Number of Peaks and the Number of Reciprocal Sign Epistatic Interactions
Empirical essays of fitness landscapes suggest that they may be rugged, that is having multiple fitness peaks. Such fitness landscapes, those that have multiple peaks, necessarily have special local structures, called reciprocal sign epistasis (Poelwijk et al. in J Theor Biol 272:141–144, 2011). Her...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9205815/ https://www.ncbi.nlm.nih.gov/pubmed/35713756 http://dx.doi.org/10.1007/s11538-022-01029-z |
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author | Saona, Raimundo Kondrashov, Fyodor A. Khudiakova, Ksenia A. |
author_facet | Saona, Raimundo Kondrashov, Fyodor A. Khudiakova, Ksenia A. |
author_sort | Saona, Raimundo |
collection | PubMed |
description | Empirical essays of fitness landscapes suggest that they may be rugged, that is having multiple fitness peaks. Such fitness landscapes, those that have multiple peaks, necessarily have special local structures, called reciprocal sign epistasis (Poelwijk et al. in J Theor Biol 272:141–144, 2011). Here, we investigate the quantitative relationship between the number of fitness peaks and the number of reciprocal sign epistatic interactions. Previously, it has been shown (Poelwijk et al. in J Theor Biol 272:141–144, 2011) that pairwise reciprocal sign epistasis is a necessary but not sufficient condition for the existence of multiple peaks. Applying discrete Morse theory, which to our knowledge has never been used in this context, we extend this result by giving the minimal number of reciprocal sign epistatic interactions required to create a given number of peaks |
format | Online Article Text |
id | pubmed-9205815 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-92058152022-06-19 Relation Between the Number of Peaks and the Number of Reciprocal Sign Epistatic Interactions Saona, Raimundo Kondrashov, Fyodor A. Khudiakova, Ksenia A. Bull Math Biol Original Article Empirical essays of fitness landscapes suggest that they may be rugged, that is having multiple fitness peaks. Such fitness landscapes, those that have multiple peaks, necessarily have special local structures, called reciprocal sign epistasis (Poelwijk et al. in J Theor Biol 272:141–144, 2011). Here, we investigate the quantitative relationship between the number of fitness peaks and the number of reciprocal sign epistatic interactions. Previously, it has been shown (Poelwijk et al. in J Theor Biol 272:141–144, 2011) that pairwise reciprocal sign epistasis is a necessary but not sufficient condition for the existence of multiple peaks. Applying discrete Morse theory, which to our knowledge has never been used in this context, we extend this result by giving the minimal number of reciprocal sign epistatic interactions required to create a given number of peaks Springer US 2022-06-17 2022 /pmc/articles/PMC9205815/ /pubmed/35713756 http://dx.doi.org/10.1007/s11538-022-01029-z Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Saona, Raimundo Kondrashov, Fyodor A. Khudiakova, Ksenia A. Relation Between the Number of Peaks and the Number of Reciprocal Sign Epistatic Interactions |
title | Relation Between the Number of Peaks and the Number of Reciprocal Sign Epistatic Interactions |
title_full | Relation Between the Number of Peaks and the Number of Reciprocal Sign Epistatic Interactions |
title_fullStr | Relation Between the Number of Peaks and the Number of Reciprocal Sign Epistatic Interactions |
title_full_unstemmed | Relation Between the Number of Peaks and the Number of Reciprocal Sign Epistatic Interactions |
title_short | Relation Between the Number of Peaks and the Number of Reciprocal Sign Epistatic Interactions |
title_sort | relation between the number of peaks and the number of reciprocal sign epistatic interactions |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9205815/ https://www.ncbi.nlm.nih.gov/pubmed/35713756 http://dx.doi.org/10.1007/s11538-022-01029-z |
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