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REFLACX, a dataset of reports and eye-tracking data for localization of abnormalities in chest x-rays
Deep learning has shown recent success in classifying anomalies in chest x-rays, but datasets are still small compared to natural image datasets. Supervision of abnormality localization has been shown to improve trained models, partially compensating for dataset sizes. However, explicitly labeling t...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9206650/ https://www.ncbi.nlm.nih.gov/pubmed/35717401 http://dx.doi.org/10.1038/s41597-022-01441-z |
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author | Bigolin Lanfredi, Ricardo Zhang, Mingyuan Auffermann, William F. Chan, Jessica Duong, Phuong-Anh T. Srikumar, Vivek Drew, Trafton Schroeder, Joyce D. Tasdizen, Tolga |
author_facet | Bigolin Lanfredi, Ricardo Zhang, Mingyuan Auffermann, William F. Chan, Jessica Duong, Phuong-Anh T. Srikumar, Vivek Drew, Trafton Schroeder, Joyce D. Tasdizen, Tolga |
author_sort | Bigolin Lanfredi, Ricardo |
collection | PubMed |
description | Deep learning has shown recent success in classifying anomalies in chest x-rays, but datasets are still small compared to natural image datasets. Supervision of abnormality localization has been shown to improve trained models, partially compensating for dataset sizes. However, explicitly labeling these anomalies requires an expert and is very time-consuming. We propose a potentially scalable method for collecting implicit localization data using an eye tracker to capture gaze locations and a microphone to capture a dictation of a report, imitating the setup of a reading room. The resulting REFLACX (Reports and Eye-Tracking Data for Localization of Abnormalities in Chest X-rays) dataset was labeled across five radiologists and contains 3,032 synchronized sets of eye-tracking data and timestamped report transcriptions for 2,616 chest x-rays from the MIMIC-CXR dataset. We also provide auxiliary annotations, including bounding boxes around lungs and heart and validation labels consisting of ellipses localizing abnormalities and image-level labels. Furthermore, a small subset of the data contains readings from all radiologists, allowing for the calculation of inter-rater scores. |
format | Online Article Text |
id | pubmed-9206650 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-92066502022-06-20 REFLACX, a dataset of reports and eye-tracking data for localization of abnormalities in chest x-rays Bigolin Lanfredi, Ricardo Zhang, Mingyuan Auffermann, William F. Chan, Jessica Duong, Phuong-Anh T. Srikumar, Vivek Drew, Trafton Schroeder, Joyce D. Tasdizen, Tolga Sci Data Data Descriptor Deep learning has shown recent success in classifying anomalies in chest x-rays, but datasets are still small compared to natural image datasets. Supervision of abnormality localization has been shown to improve trained models, partially compensating for dataset sizes. However, explicitly labeling these anomalies requires an expert and is very time-consuming. We propose a potentially scalable method for collecting implicit localization data using an eye tracker to capture gaze locations and a microphone to capture a dictation of a report, imitating the setup of a reading room. The resulting REFLACX (Reports and Eye-Tracking Data for Localization of Abnormalities in Chest X-rays) dataset was labeled across five radiologists and contains 3,032 synchronized sets of eye-tracking data and timestamped report transcriptions for 2,616 chest x-rays from the MIMIC-CXR dataset. We also provide auxiliary annotations, including bounding boxes around lungs and heart and validation labels consisting of ellipses localizing abnormalities and image-level labels. Furthermore, a small subset of the data contains readings from all radiologists, allowing for the calculation of inter-rater scores. Nature Publishing Group UK 2022-06-18 /pmc/articles/PMC9206650/ /pubmed/35717401 http://dx.doi.org/10.1038/s41597-022-01441-z Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Bigolin Lanfredi, Ricardo Zhang, Mingyuan Auffermann, William F. Chan, Jessica Duong, Phuong-Anh T. Srikumar, Vivek Drew, Trafton Schroeder, Joyce D. Tasdizen, Tolga REFLACX, a dataset of reports and eye-tracking data for localization of abnormalities in chest x-rays |
title | REFLACX, a dataset of reports and eye-tracking data for localization of abnormalities in chest x-rays |
title_full | REFLACX, a dataset of reports and eye-tracking data for localization of abnormalities in chest x-rays |
title_fullStr | REFLACX, a dataset of reports and eye-tracking data for localization of abnormalities in chest x-rays |
title_full_unstemmed | REFLACX, a dataset of reports and eye-tracking data for localization of abnormalities in chest x-rays |
title_short | REFLACX, a dataset of reports and eye-tracking data for localization of abnormalities in chest x-rays |
title_sort | reflacx, a dataset of reports and eye-tracking data for localization of abnormalities in chest x-rays |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9206650/ https://www.ncbi.nlm.nih.gov/pubmed/35717401 http://dx.doi.org/10.1038/s41597-022-01441-z |
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