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Expression, characterization, and activity optimization of a novel cellulase from the thermophilic bacteria Cohnella sp. A01

Cellulases are hydrolytic enzymes with wide scientific and industrial applications. We described a novel cellulase, CelC307, from the thermophilic indigenous Cohnella sp. A01. The 3-D structure of the CelC307 was predicted by comparative modeling. Docking of CelC307 with specific inhibitors and mole...

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Autores principales: Mohammadi, Shima, Tarrahimofrad, Hossein, Arjmand, Sareh, Zamani, Javad, Haghbeen, Kamahldin, Aminzadeh, Saeed
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9206686/
https://www.ncbi.nlm.nih.gov/pubmed/35717508
http://dx.doi.org/10.1038/s41598-022-14651-7
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author Mohammadi, Shima
Tarrahimofrad, Hossein
Arjmand, Sareh
Zamani, Javad
Haghbeen, Kamahldin
Aminzadeh, Saeed
author_facet Mohammadi, Shima
Tarrahimofrad, Hossein
Arjmand, Sareh
Zamani, Javad
Haghbeen, Kamahldin
Aminzadeh, Saeed
author_sort Mohammadi, Shima
collection PubMed
description Cellulases are hydrolytic enzymes with wide scientific and industrial applications. We described a novel cellulase, CelC307, from the thermophilic indigenous Cohnella sp. A01. The 3-D structure of the CelC307 was predicted by comparative modeling. Docking of CelC307 with specific inhibitors and molecular dynamic (MD) simulation revealed that these ligands bound in a non-competitive manner. The CelC307 protein was purified and characterized after recombinant expression in Escherichia coli (E. coli) BL21. Using CMC 1% as the substrate, the thermodynamic values were determined as K(m) 0.46 mM, k(cat) 104.30 × 10(–3) (S(−1)), and k(cat)/K(m) 226.73 (M(−1) S(−1)). The CelC307 was optimally active at 40 °C and pH 7.0. The culture condition was optimized for improved CelC307 expression using Plackett–Burman and Box–Behnken design as follows: temperature 20 °C, pH 7.5, and inoculation concentration with an OD(600) = 1. The endoglucanase activity was positively modulated in the presence of Na(+), Li(+), Ca(2+), 2-mercaptoethanol (2-ME), and glycerol. The thermodynamic parameters calculated for CelC307 confirmed its inherent thermostability. The characterized CelC307 may be a suitable candidate for various biotechnological applications.
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spelling pubmed-92066862022-06-20 Expression, characterization, and activity optimization of a novel cellulase from the thermophilic bacteria Cohnella sp. A01 Mohammadi, Shima Tarrahimofrad, Hossein Arjmand, Sareh Zamani, Javad Haghbeen, Kamahldin Aminzadeh, Saeed Sci Rep Article Cellulases are hydrolytic enzymes with wide scientific and industrial applications. We described a novel cellulase, CelC307, from the thermophilic indigenous Cohnella sp. A01. The 3-D structure of the CelC307 was predicted by comparative modeling. Docking of CelC307 with specific inhibitors and molecular dynamic (MD) simulation revealed that these ligands bound in a non-competitive manner. The CelC307 protein was purified and characterized after recombinant expression in Escherichia coli (E. coli) BL21. Using CMC 1% as the substrate, the thermodynamic values were determined as K(m) 0.46 mM, k(cat) 104.30 × 10(–3) (S(−1)), and k(cat)/K(m) 226.73 (M(−1) S(−1)). The CelC307 was optimally active at 40 °C and pH 7.0. The culture condition was optimized for improved CelC307 expression using Plackett–Burman and Box–Behnken design as follows: temperature 20 °C, pH 7.5, and inoculation concentration with an OD(600) = 1. The endoglucanase activity was positively modulated in the presence of Na(+), Li(+), Ca(2+), 2-mercaptoethanol (2-ME), and glycerol. The thermodynamic parameters calculated for CelC307 confirmed its inherent thermostability. The characterized CelC307 may be a suitable candidate for various biotechnological applications. Nature Publishing Group UK 2022-06-18 /pmc/articles/PMC9206686/ /pubmed/35717508 http://dx.doi.org/10.1038/s41598-022-14651-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Mohammadi, Shima
Tarrahimofrad, Hossein
Arjmand, Sareh
Zamani, Javad
Haghbeen, Kamahldin
Aminzadeh, Saeed
Expression, characterization, and activity optimization of a novel cellulase from the thermophilic bacteria Cohnella sp. A01
title Expression, characterization, and activity optimization of a novel cellulase from the thermophilic bacteria Cohnella sp. A01
title_full Expression, characterization, and activity optimization of a novel cellulase from the thermophilic bacteria Cohnella sp. A01
title_fullStr Expression, characterization, and activity optimization of a novel cellulase from the thermophilic bacteria Cohnella sp. A01
title_full_unstemmed Expression, characterization, and activity optimization of a novel cellulase from the thermophilic bacteria Cohnella sp. A01
title_short Expression, characterization, and activity optimization of a novel cellulase from the thermophilic bacteria Cohnella sp. A01
title_sort expression, characterization, and activity optimization of a novel cellulase from the thermophilic bacteria cohnella sp. a01
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9206686/
https://www.ncbi.nlm.nih.gov/pubmed/35717508
http://dx.doi.org/10.1038/s41598-022-14651-7
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