Cargando…

Programming Molecular Systems To Emulate a Learning Spiking Neuron

[Image: see text] Hebbian theory seeks to explain how the neurons in the brain adapt to stimuli to enable learning. An interesting feature of Hebbian learning is that it is an unsupervised method and, as such, does not require feedback, making it suitable in contexts where systems have to learn auto...

Descripción completa

Detalles Bibliográficos
Autores principales: Fil, Jakub, Dalchau, Neil, Chu, Dominique
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9208023/
https://www.ncbi.nlm.nih.gov/pubmed/35622431
http://dx.doi.org/10.1021/acssynbio.1c00625
_version_ 1784729651222937600
author Fil, Jakub
Dalchau, Neil
Chu, Dominique
author_facet Fil, Jakub
Dalchau, Neil
Chu, Dominique
author_sort Fil, Jakub
collection PubMed
description [Image: see text] Hebbian theory seeks to explain how the neurons in the brain adapt to stimuli to enable learning. An interesting feature of Hebbian learning is that it is an unsupervised method and, as such, does not require feedback, making it suitable in contexts where systems have to learn autonomously. This paper explores how molecular systems can be designed to show such protointelligent behaviors and proposes the first chemical reaction network (CRN) that can exhibit autonomous Hebbian learning across arbitrarily many input channels. The system emulates a spiking neuron, and we demonstrate that it can learn statistical biases of incoming inputs. The basic CRN is a minimal, thermodynamically plausible set of microreversible chemical equations that can be analyzed with respect to their energy requirements. However, to explore how such chemical systems might be engineered de novo, we also propose an extended version based on enzyme-driven compartmentalized reactions. Finally, we show how a purely DNA system, built upon the paradigm of DNA strand displacement, can realize neuronal dynamics. Our analysis provides a compelling blueprint for exploring autonomous learning in biological settings, bringing us closer to realizing real synthetic biological intelligence.
format Online
Article
Text
id pubmed-9208023
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-92080232022-06-21 Programming Molecular Systems To Emulate a Learning Spiking Neuron Fil, Jakub Dalchau, Neil Chu, Dominique ACS Synth Biol [Image: see text] Hebbian theory seeks to explain how the neurons in the brain adapt to stimuli to enable learning. An interesting feature of Hebbian learning is that it is an unsupervised method and, as such, does not require feedback, making it suitable in contexts where systems have to learn autonomously. This paper explores how molecular systems can be designed to show such protointelligent behaviors and proposes the first chemical reaction network (CRN) that can exhibit autonomous Hebbian learning across arbitrarily many input channels. The system emulates a spiking neuron, and we demonstrate that it can learn statistical biases of incoming inputs. The basic CRN is a minimal, thermodynamically plausible set of microreversible chemical equations that can be analyzed with respect to their energy requirements. However, to explore how such chemical systems might be engineered de novo, we also propose an extended version based on enzyme-driven compartmentalized reactions. Finally, we show how a purely DNA system, built upon the paradigm of DNA strand displacement, can realize neuronal dynamics. Our analysis provides a compelling blueprint for exploring autonomous learning in biological settings, bringing us closer to realizing real synthetic biological intelligence. American Chemical Society 2022-05-27 2022-06-17 /pmc/articles/PMC9208023/ /pubmed/35622431 http://dx.doi.org/10.1021/acssynbio.1c00625 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Fil, Jakub
Dalchau, Neil
Chu, Dominique
Programming Molecular Systems To Emulate a Learning Spiking Neuron
title Programming Molecular Systems To Emulate a Learning Spiking Neuron
title_full Programming Molecular Systems To Emulate a Learning Spiking Neuron
title_fullStr Programming Molecular Systems To Emulate a Learning Spiking Neuron
title_full_unstemmed Programming Molecular Systems To Emulate a Learning Spiking Neuron
title_short Programming Molecular Systems To Emulate a Learning Spiking Neuron
title_sort programming molecular systems to emulate a learning spiking neuron
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9208023/
https://www.ncbi.nlm.nih.gov/pubmed/35622431
http://dx.doi.org/10.1021/acssynbio.1c00625
work_keys_str_mv AT filjakub programmingmolecularsystemstoemulatealearningspikingneuron
AT dalchauneil programmingmolecularsystemstoemulatealearningspikingneuron
AT chudominique programmingmolecularsystemstoemulatealearningspikingneuron