Cargando…

128 Creating a data repository of sociomic factors to further characterize clinical outcomes and disease progression in patients with asthma

OBJECTIVES/GOALS: To assemble publicly-available, proprietary, and geocoded datasets about social, environmental, behavioral, and psychological exposures experienced by children with asthma, to provide a technical overview of data aggregation, management, and integration processes utilized, and to b...

Descripción completa

Detalles Bibliográficos
Autores principales: Makhni, Sonya, Barbarioli, Bruno, Krishnan, Sanjay, Ozik, Jonathan, Lazenby, Kevin, Sleiman, Marc, Bhargava, Ankur, Solway, Julian, Cohen, Ellen, Volchenboum, Samuel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cambridge University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9209251/
http://dx.doi.org/10.1017/cts.2022.42
_version_ 1784729908207943680
author Makhni, Sonya
Barbarioli, Bruno
Krishnan, Sanjay
Ozik, Jonathan
Lazenby, Kevin
Sleiman, Marc
Bhargava, Ankur
Solway, Julian
Cohen, Ellen
Volchenboum, Samuel
author_facet Makhni, Sonya
Barbarioli, Bruno
Krishnan, Sanjay
Ozik, Jonathan
Lazenby, Kevin
Sleiman, Marc
Bhargava, Ankur
Solway, Julian
Cohen, Ellen
Volchenboum, Samuel
author_sort Makhni, Sonya
collection PubMed
description OBJECTIVES/GOALS: To assemble publicly-available, proprietary, and geocoded datasets about social, environmental, behavioral, and psychological exposures experienced by children with asthma, to provide a technical overview of data aggregation, management, and integration processes utilized, and to build predictive models using sociome and clinical data. METHODS/STUDY POPULATION: Publicly-available data involving census information, crime, green space, building permits, vacant and abandoned buildings, traffic (City of Chicago data portal), pollution and weather (National Oceanic and Atmospheric Administration), and noise (Array of Things project) were assembled. We placed a local instance of the Pelias geocoder on the UChicago Center for Research Informatics HIPAA-compliant infrastructure. The UChicago Clinical Research Data Warehouse will be leveraged to obtain clinical information for children diagnosed with asthma at UChicago Medicine between 2007 and 2021. The address of each child will be subjected to geocoding, and this information will be aligned with imported sociome data. A model will be built to account for each sociome elements contribution to asthma outcomes. RESULTS/ANTICIPATED RESULTS: Here we are creating sustainable and scalable ways for collecting, standardizing, and sharing real-world sociome data, simultaneously linking those data back to patient information. With this work, we aim to demonstrate feasibility of a data-commons-as-a-service for clinical and sociome data and to provide technical specifications and descriptions of processes employed. Creating generalizable and scalable infrastructure to support research of social and environmental impacts on clinical outcomes is critical, and our work will provide a framework to be used in other disease states. Further, this infrastructure will facilitate the application of advanced analytical tools and visualization platforms to accelerate the study of diseases and lead to new insights into factors influencing outcomes. DISCUSSION/SIGNIFICANCE: Beyond focusing on and treating biological mechanisms of disease, advancing health also requires addressing adverse consequences of sociome factors on clinical outcomes. We describe an innovative process to comprehensively codify and quantify such information in a way suitable for large scale co-analysis with biological and clinical data.
format Online
Article
Text
id pubmed-9209251
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Cambridge University Press
record_format MEDLINE/PubMed
spelling pubmed-92092512022-07-01 128 Creating a data repository of sociomic factors to further characterize clinical outcomes and disease progression in patients with asthma Makhni, Sonya Barbarioli, Bruno Krishnan, Sanjay Ozik, Jonathan Lazenby, Kevin Sleiman, Marc Bhargava, Ankur Solway, Julian Cohen, Ellen Volchenboum, Samuel J Clin Transl Sci Community Engagement OBJECTIVES/GOALS: To assemble publicly-available, proprietary, and geocoded datasets about social, environmental, behavioral, and psychological exposures experienced by children with asthma, to provide a technical overview of data aggregation, management, and integration processes utilized, and to build predictive models using sociome and clinical data. METHODS/STUDY POPULATION: Publicly-available data involving census information, crime, green space, building permits, vacant and abandoned buildings, traffic (City of Chicago data portal), pollution and weather (National Oceanic and Atmospheric Administration), and noise (Array of Things project) were assembled. We placed a local instance of the Pelias geocoder on the UChicago Center for Research Informatics HIPAA-compliant infrastructure. The UChicago Clinical Research Data Warehouse will be leveraged to obtain clinical information for children diagnosed with asthma at UChicago Medicine between 2007 and 2021. The address of each child will be subjected to geocoding, and this information will be aligned with imported sociome data. A model will be built to account for each sociome elements contribution to asthma outcomes. RESULTS/ANTICIPATED RESULTS: Here we are creating sustainable and scalable ways for collecting, standardizing, and sharing real-world sociome data, simultaneously linking those data back to patient information. With this work, we aim to demonstrate feasibility of a data-commons-as-a-service for clinical and sociome data and to provide technical specifications and descriptions of processes employed. Creating generalizable and scalable infrastructure to support research of social and environmental impacts on clinical outcomes is critical, and our work will provide a framework to be used in other disease states. Further, this infrastructure will facilitate the application of advanced analytical tools and visualization platforms to accelerate the study of diseases and lead to new insights into factors influencing outcomes. DISCUSSION/SIGNIFICANCE: Beyond focusing on and treating biological mechanisms of disease, advancing health also requires addressing adverse consequences of sociome factors on clinical outcomes. We describe an innovative process to comprehensively codify and quantify such information in a way suitable for large scale co-analysis with biological and clinical data. Cambridge University Press 2022-04-19 /pmc/articles/PMC9209251/ http://dx.doi.org/10.1017/cts.2022.42 Text en © The Association for Clinical and Translational Science 2022 https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article, distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is unaltered and is properly cited. The written permission of Cambridge University Press must be obtained for commercial re-use or in order to create a derivative work.
spellingShingle Community Engagement
Makhni, Sonya
Barbarioli, Bruno
Krishnan, Sanjay
Ozik, Jonathan
Lazenby, Kevin
Sleiman, Marc
Bhargava, Ankur
Solway, Julian
Cohen, Ellen
Volchenboum, Samuel
128 Creating a data repository of sociomic factors to further characterize clinical outcomes and disease progression in patients with asthma
title 128 Creating a data repository of sociomic factors to further characterize clinical outcomes and disease progression in patients with asthma
title_full 128 Creating a data repository of sociomic factors to further characterize clinical outcomes and disease progression in patients with asthma
title_fullStr 128 Creating a data repository of sociomic factors to further characterize clinical outcomes and disease progression in patients with asthma
title_full_unstemmed 128 Creating a data repository of sociomic factors to further characterize clinical outcomes and disease progression in patients with asthma
title_short 128 Creating a data repository of sociomic factors to further characterize clinical outcomes and disease progression in patients with asthma
title_sort 128 creating a data repository of sociomic factors to further characterize clinical outcomes and disease progression in patients with asthma
topic Community Engagement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9209251/
http://dx.doi.org/10.1017/cts.2022.42
work_keys_str_mv AT makhnisonya 128creatingadatarepositoryofsociomicfactorstofurthercharacterizeclinicaloutcomesanddiseaseprogressioninpatientswithasthma
AT barbariolibruno 128creatingadatarepositoryofsociomicfactorstofurthercharacterizeclinicaloutcomesanddiseaseprogressioninpatientswithasthma
AT krishnansanjay 128creatingadatarepositoryofsociomicfactorstofurthercharacterizeclinicaloutcomesanddiseaseprogressioninpatientswithasthma
AT ozikjonathan 128creatingadatarepositoryofsociomicfactorstofurthercharacterizeclinicaloutcomesanddiseaseprogressioninpatientswithasthma
AT lazenbykevin 128creatingadatarepositoryofsociomicfactorstofurthercharacterizeclinicaloutcomesanddiseaseprogressioninpatientswithasthma
AT sleimanmarc 128creatingadatarepositoryofsociomicfactorstofurthercharacterizeclinicaloutcomesanddiseaseprogressioninpatientswithasthma
AT bhargavaankur 128creatingadatarepositoryofsociomicfactorstofurthercharacterizeclinicaloutcomesanddiseaseprogressioninpatientswithasthma
AT solwayjulian 128creatingadatarepositoryofsociomicfactorstofurthercharacterizeclinicaloutcomesanddiseaseprogressioninpatientswithasthma
AT cohenellen 128creatingadatarepositoryofsociomicfactorstofurthercharacterizeclinicaloutcomesanddiseaseprogressioninpatientswithasthma
AT volchenboumsamuel 128creatingadatarepositoryofsociomicfactorstofurthercharacterizeclinicaloutcomesanddiseaseprogressioninpatientswithasthma