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Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population
High-altitude polycythemia (HAPC) is characterized by excessive proliferation of erythrocytes, resulting from the hypobaric hypoxia condition in high altitude. The genetic variants and molecular mechanisms of HAPC remain unclear in highlanders. We recruited 141 Tibetan dwellers, including 70 HAPC pa...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer India
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9209555/ https://www.ncbi.nlm.nih.gov/pubmed/35747576 http://dx.doi.org/10.1007/s12288-021-01474-1 |
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author | Zhang, Zhiying Ma, Lifeng Fan, Xiaowei Wang, Kun Liu, Lijun Zhao, Yiduo Zhao, ZhiPeng Zhang, Han Liang, Tian Dong, Wenxue Cai, Peng Li, Yansong Li, Jing Zhou, Songhua Kang, Longli |
author_facet | Zhang, Zhiying Ma, Lifeng Fan, Xiaowei Wang, Kun Liu, Lijun Zhao, Yiduo Zhao, ZhiPeng Zhang, Han Liang, Tian Dong, Wenxue Cai, Peng Li, Yansong Li, Jing Zhou, Songhua Kang, Longli |
author_sort | Zhang, Zhiying |
collection | PubMed |
description | High-altitude polycythemia (HAPC) is characterized by excessive proliferation of erythrocytes, resulting from the hypobaric hypoxia condition in high altitude. The genetic variants and molecular mechanisms of HAPC remain unclear in highlanders. We recruited 141 Tibetan dwellers, including 70 HAPC patients and 71 healthy controls, to detect the possible genetic variants associated with the disease; and performed targeted sequencing on 529 genes associated with the oxygen metabolism and erythrocyte regulation, utilized unconditional logistic regression analysis and GO (gene ontology) analysis to investigate the genetic variations of HAPC. We identified 12 single nucleotide variants, harbored in 12 genes, associated with the risk of HAPC (4.7 ≤ odd ratios ≤ 13.6; 7.6E − 08 ≤ p-value ≤ 1E − 04). The pathway enrichment study of these genes indicated the three pathways, the PI3K-AKT pathway, JAK-STAT pathway, and HIF-1 pathway, are essential, which p-values as 3.70E − 08, 1.28 E − 07, and 3.98 E − 06, respectively. We are hopeful that our results will provide a reference for the etiology research of HAPC. However, additional genetic risk factors and functional investigations are necessary to confirm our results further. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12288-021-01474-1. |
format | Online Article Text |
id | pubmed-9209555 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer India |
record_format | MEDLINE/PubMed |
spelling | pubmed-92095552022-06-22 Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population Zhang, Zhiying Ma, Lifeng Fan, Xiaowei Wang, Kun Liu, Lijun Zhao, Yiduo Zhao, ZhiPeng Zhang, Han Liang, Tian Dong, Wenxue Cai, Peng Li, Yansong Li, Jing Zhou, Songhua Kang, Longli Indian J Hematol Blood Transfus Original Article High-altitude polycythemia (HAPC) is characterized by excessive proliferation of erythrocytes, resulting from the hypobaric hypoxia condition in high altitude. The genetic variants and molecular mechanisms of HAPC remain unclear in highlanders. We recruited 141 Tibetan dwellers, including 70 HAPC patients and 71 healthy controls, to detect the possible genetic variants associated with the disease; and performed targeted sequencing on 529 genes associated with the oxygen metabolism and erythrocyte regulation, utilized unconditional logistic regression analysis and GO (gene ontology) analysis to investigate the genetic variations of HAPC. We identified 12 single nucleotide variants, harbored in 12 genes, associated with the risk of HAPC (4.7 ≤ odd ratios ≤ 13.6; 7.6E − 08 ≤ p-value ≤ 1E − 04). The pathway enrichment study of these genes indicated the three pathways, the PI3K-AKT pathway, JAK-STAT pathway, and HIF-1 pathway, are essential, which p-values as 3.70E − 08, 1.28 E − 07, and 3.98 E − 06, respectively. We are hopeful that our results will provide a reference for the etiology research of HAPC. However, additional genetic risk factors and functional investigations are necessary to confirm our results further. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12288-021-01474-1. Springer India 2021-08-03 2022-07 /pmc/articles/PMC9209555/ /pubmed/35747576 http://dx.doi.org/10.1007/s12288-021-01474-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Zhang, Zhiying Ma, Lifeng Fan, Xiaowei Wang, Kun Liu, Lijun Zhao, Yiduo Zhao, ZhiPeng Zhang, Han Liang, Tian Dong, Wenxue Cai, Peng Li, Yansong Li, Jing Zhou, Songhua Kang, Longli Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population |
title | Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population |
title_full | Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population |
title_fullStr | Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population |
title_full_unstemmed | Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population |
title_short | Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population |
title_sort | targeted sequencing identifies the genetic variants associated with high-altitude polycythemia in the tibetan population |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9209555/ https://www.ncbi.nlm.nih.gov/pubmed/35747576 http://dx.doi.org/10.1007/s12288-021-01474-1 |
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