Cargando…

Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population

High-altitude polycythemia (HAPC) is characterized by excessive proliferation of erythrocytes, resulting from the hypobaric hypoxia condition in high altitude. The genetic variants and molecular mechanisms of HAPC remain unclear in highlanders. We recruited 141 Tibetan dwellers, including 70 HAPC pa...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Zhiying, Ma, Lifeng, Fan, Xiaowei, Wang, Kun, Liu, Lijun, Zhao, Yiduo, Zhao, ZhiPeng, Zhang, Han, Liang, Tian, Dong, Wenxue, Cai, Peng, Li, Yansong, Li, Jing, Zhou, Songhua, Kang, Longli
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer India 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9209555/
https://www.ncbi.nlm.nih.gov/pubmed/35747576
http://dx.doi.org/10.1007/s12288-021-01474-1
_version_ 1784729979455537152
author Zhang, Zhiying
Ma, Lifeng
Fan, Xiaowei
Wang, Kun
Liu, Lijun
Zhao, Yiduo
Zhao, ZhiPeng
Zhang, Han
Liang, Tian
Dong, Wenxue
Cai, Peng
Li, Yansong
Li, Jing
Zhou, Songhua
Kang, Longli
author_facet Zhang, Zhiying
Ma, Lifeng
Fan, Xiaowei
Wang, Kun
Liu, Lijun
Zhao, Yiduo
Zhao, ZhiPeng
Zhang, Han
Liang, Tian
Dong, Wenxue
Cai, Peng
Li, Yansong
Li, Jing
Zhou, Songhua
Kang, Longli
author_sort Zhang, Zhiying
collection PubMed
description High-altitude polycythemia (HAPC) is characterized by excessive proliferation of erythrocytes, resulting from the hypobaric hypoxia condition in high altitude. The genetic variants and molecular mechanisms of HAPC remain unclear in highlanders. We recruited 141 Tibetan dwellers, including 70 HAPC patients and 71 healthy controls, to detect the possible genetic variants associated with the disease; and performed targeted sequencing on 529 genes associated with the oxygen metabolism and erythrocyte regulation, utilized unconditional logistic regression analysis and GO (gene ontology) analysis to investigate the genetic variations of HAPC. We identified 12 single nucleotide variants, harbored in 12 genes, associated with the risk of HAPC (4.7 ≤ odd ratios ≤ 13.6; 7.6E − 08 ≤ p-value ≤ 1E − 04). The pathway enrichment study of these genes indicated the three pathways, the PI3K-AKT pathway, JAK-STAT pathway, and HIF-1 pathway, are essential, which p-values as 3.70E − 08, 1.28 E − 07, and 3.98 E − 06, respectively. We are hopeful that our results will provide a reference for the etiology research of HAPC. However, additional genetic risk factors and functional investigations are necessary to confirm our results further. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12288-021-01474-1.
format Online
Article
Text
id pubmed-9209555
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Springer India
record_format MEDLINE/PubMed
spelling pubmed-92095552022-06-22 Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population Zhang, Zhiying Ma, Lifeng Fan, Xiaowei Wang, Kun Liu, Lijun Zhao, Yiduo Zhao, ZhiPeng Zhang, Han Liang, Tian Dong, Wenxue Cai, Peng Li, Yansong Li, Jing Zhou, Songhua Kang, Longli Indian J Hematol Blood Transfus Original Article High-altitude polycythemia (HAPC) is characterized by excessive proliferation of erythrocytes, resulting from the hypobaric hypoxia condition in high altitude. The genetic variants and molecular mechanisms of HAPC remain unclear in highlanders. We recruited 141 Tibetan dwellers, including 70 HAPC patients and 71 healthy controls, to detect the possible genetic variants associated with the disease; and performed targeted sequencing on 529 genes associated with the oxygen metabolism and erythrocyte regulation, utilized unconditional logistic regression analysis and GO (gene ontology) analysis to investigate the genetic variations of HAPC. We identified 12 single nucleotide variants, harbored in 12 genes, associated with the risk of HAPC (4.7 ≤ odd ratios ≤ 13.6; 7.6E − 08 ≤ p-value ≤ 1E − 04). The pathway enrichment study of these genes indicated the three pathways, the PI3K-AKT pathway, JAK-STAT pathway, and HIF-1 pathway, are essential, which p-values as 3.70E − 08, 1.28 E − 07, and 3.98 E − 06, respectively. We are hopeful that our results will provide a reference for the etiology research of HAPC. However, additional genetic risk factors and functional investigations are necessary to confirm our results further. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12288-021-01474-1. Springer India 2021-08-03 2022-07 /pmc/articles/PMC9209555/ /pubmed/35747576 http://dx.doi.org/10.1007/s12288-021-01474-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
Zhang, Zhiying
Ma, Lifeng
Fan, Xiaowei
Wang, Kun
Liu, Lijun
Zhao, Yiduo
Zhao, ZhiPeng
Zhang, Han
Liang, Tian
Dong, Wenxue
Cai, Peng
Li, Yansong
Li, Jing
Zhou, Songhua
Kang, Longli
Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population
title Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population
title_full Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population
title_fullStr Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population
title_full_unstemmed Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population
title_short Targeted Sequencing Identifies the Genetic Variants Associated with High-altitude Polycythemia in the Tibetan Population
title_sort targeted sequencing identifies the genetic variants associated with high-altitude polycythemia in the tibetan population
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9209555/
https://www.ncbi.nlm.nih.gov/pubmed/35747576
http://dx.doi.org/10.1007/s12288-021-01474-1
work_keys_str_mv AT zhangzhiying targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT malifeng targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT fanxiaowei targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT wangkun targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT liulijun targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT zhaoyiduo targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT zhaozhipeng targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT zhanghan targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT liangtian targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT dongwenxue targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT caipeng targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT liyansong targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT lijing targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT zhousonghua targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation
AT kanglongli targetedsequencingidentifiesthegeneticvariantsassociatedwithhighaltitudepolycythemiainthetibetanpopulation