Cargando…
Fast and accurate matching of cellular barcodes across short-reads and long-reads of single-cell RNA-seq experiments
Single-cell RNA sequencing allows for characterizing the gene expression landscape at the cell type level. However, because of its use of short-reads, it is severely limited at detecting full-length features of transcripts such as alternative splicing. New library preparation techniques attempt to e...
Autores principales: | Ebrahimi, Ghazal, Orabi, Baraa, Robinson, Meghan, Chauve, Cedric, Flannigan, Ryan, Hach, Faraz |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9209721/ https://www.ncbi.nlm.nih.gov/pubmed/35747387 http://dx.doi.org/10.1016/j.isci.2022.104530 |
Ejemplares similares
-
Genion, an accurate tool to detect gene fusion from long transcriptomics reads
por: Karaoglanoglu, Fatih, et al.
Publicado: (2022) -
Freddie: annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
por: Orabi, Baraa, et al.
Publicado: (2022) -
HASLR: Fast Hybrid Assembly of Long Reads
por: Haghshenas, Ehsan, et al.
Publicado: (2020) -
Pacybara: Accurate long-read sequencing for barcoded mutagenized allelic libraries
por: Weile, Jochen, et al.
Publicado: (2023) -
RNASequel: accurate and repeat tolerant realignment of RNA-seq reads
por: Wilson, Gavin W., et al.
Publicado: (2015)