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Conservation of griseofulvin genes in the gsf gene cluster among fungal genomes
The polyketide griseofulvin is a natural antifungal compound and research in griseofulvin has been key in establishing our current understanding of polyketide biosynthesis. Nevertheless, the griseofulvin gsf biosynthetic gene cluster (BGC) remains poorly understood in most fungal species, including...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9210304/ https://www.ncbi.nlm.nih.gov/pubmed/34792561 http://dx.doi.org/10.1093/g3journal/jkab399 |
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author | Aris, Parisa Yan, Lihong Wei, Yulong Chang, Ying Shi, Bihong Xia, Xuhua |
author_facet | Aris, Parisa Yan, Lihong Wei, Yulong Chang, Ying Shi, Bihong Xia, Xuhua |
author_sort | Aris, Parisa |
collection | PubMed |
description | The polyketide griseofulvin is a natural antifungal compound and research in griseofulvin has been key in establishing our current understanding of polyketide biosynthesis. Nevertheless, the griseofulvin gsf biosynthetic gene cluster (BGC) remains poorly understood in most fungal species, including Penicillium griseofulvum where griseofulvin was first isolated. To elucidate essential genes involved in griseofulvin biosynthesis, we performed third-generation sequencing to obtain the genome of P. griseofulvum strain D-756. Furthermore, we gathered publicly available genome of 11 other fungal species in which gsf gene cluster was identified. In a comparative genome analysis, we annotated and compared the gsf BGC of all 12 fungal genomes. Our findings show no gene rearrangements at the gsf BGC. Furthermore, seven gsf genes are conserved by most genomes surveyed whereas the remaining six were poorly conserved. This study provides new insights into differences between gsf BGC and suggests that seven gsf genes are essential in griseofulvin production. |
format | Online Article Text |
id | pubmed-9210304 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-92103042022-06-21 Conservation of griseofulvin genes in the gsf gene cluster among fungal genomes Aris, Parisa Yan, Lihong Wei, Yulong Chang, Ying Shi, Bihong Xia, Xuhua G3 (Bethesda) Investigation The polyketide griseofulvin is a natural antifungal compound and research in griseofulvin has been key in establishing our current understanding of polyketide biosynthesis. Nevertheless, the griseofulvin gsf biosynthetic gene cluster (BGC) remains poorly understood in most fungal species, including Penicillium griseofulvum where griseofulvin was first isolated. To elucidate essential genes involved in griseofulvin biosynthesis, we performed third-generation sequencing to obtain the genome of P. griseofulvum strain D-756. Furthermore, we gathered publicly available genome of 11 other fungal species in which gsf gene cluster was identified. In a comparative genome analysis, we annotated and compared the gsf BGC of all 12 fungal genomes. Our findings show no gene rearrangements at the gsf BGC. Furthermore, seven gsf genes are conserved by most genomes surveyed whereas the remaining six were poorly conserved. This study provides new insights into differences between gsf BGC and suggests that seven gsf genes are essential in griseofulvin production. Oxford University Press 2021-11-18 /pmc/articles/PMC9210304/ /pubmed/34792561 http://dx.doi.org/10.1093/g3journal/jkab399 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Investigation Aris, Parisa Yan, Lihong Wei, Yulong Chang, Ying Shi, Bihong Xia, Xuhua Conservation of griseofulvin genes in the gsf gene cluster among fungal genomes |
title | Conservation of griseofulvin genes in the gsf gene cluster among fungal genomes |
title_full | Conservation of griseofulvin genes in the gsf gene cluster among fungal genomes |
title_fullStr | Conservation of griseofulvin genes in the gsf gene cluster among fungal genomes |
title_full_unstemmed | Conservation of griseofulvin genes in the gsf gene cluster among fungal genomes |
title_short | Conservation of griseofulvin genes in the gsf gene cluster among fungal genomes |
title_sort | conservation of griseofulvin genes in the gsf gene cluster among fungal genomes |
topic | Investigation |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9210304/ https://www.ncbi.nlm.nih.gov/pubmed/34792561 http://dx.doi.org/10.1093/g3journal/jkab399 |
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