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Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails
BACKGROUND: Hu sheep and Tibetan sheep in China are characterized by fat tails and thin tails, respectively. Several transcriptomes have been conducted in different sheep breeds to identify the differentially expressed genes (DEGs) underlying this trait. However, these studies identified different D...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9210821/ https://www.ncbi.nlm.nih.gov/pubmed/35725366 http://dx.doi.org/10.1186/s12864-022-08657-8 |
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author | Jin, Meilin Fei, Xiaojuan Li, Taotao Lu, Zengkui Chu, Mingxing Di, Ran He, Xiaoyun Wang, Xiangyu Wei, Caihong |
author_facet | Jin, Meilin Fei, Xiaojuan Li, Taotao Lu, Zengkui Chu, Mingxing Di, Ran He, Xiaoyun Wang, Xiangyu Wei, Caihong |
author_sort | Jin, Meilin |
collection | PubMed |
description | BACKGROUND: Hu sheep and Tibetan sheep in China are characterized by fat tails and thin tails, respectively. Several transcriptomes have been conducted in different sheep breeds to identify the differentially expressed genes (DEGs) underlying this trait. However, these studies identified different DEGs in different sheep breeds. RESULTS: Hence, RNA sequencing was performed on Hu sheep and Tibetan sheep. We obtained a total of 45.57 and 43.82 million sequencing reads, respectively. Two libraries mapped reads from 36.93 and 38.55 million reads after alignment to the reference sequences. 2108 DEGs were identified, including 1247 downregulated and 861 upregulated DEGs. GO and KEGG analyses of all DEGs demonstrated that pathways were enriched in the regulation of lipolysis in adipocytes and terms related to the chemokine signalling pathway, lysosomes, and glycosaminoglycan degradation. Eight genes were selected for validation by RT–qPCR. In addition, the transfection of BMP2 overexpression into preadipocytes resulted in increased PPAR-γ expression and expression. BMP2 potentially induces adipogenesis through LOX in preadipocytes. The number of lipid drops in BMP2 overexpression detected by oil red O staining was also greater than that in the negative control. CONCLUSION: In summary, these results showed that significant genes (BMP2, HOXA11, PPP1CC and LPIN1) are involved in the regulation of adipogenesis metabolism and suggested novel insights into metabolic molecules in sheep fat tails. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-022-08657-8. |
format | Online Article Text |
id | pubmed-9210821 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-92108212022-06-22 Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails Jin, Meilin Fei, Xiaojuan Li, Taotao Lu, Zengkui Chu, Mingxing Di, Ran He, Xiaoyun Wang, Xiangyu Wei, Caihong BMC Genomics Research BACKGROUND: Hu sheep and Tibetan sheep in China are characterized by fat tails and thin tails, respectively. Several transcriptomes have been conducted in different sheep breeds to identify the differentially expressed genes (DEGs) underlying this trait. However, these studies identified different DEGs in different sheep breeds. RESULTS: Hence, RNA sequencing was performed on Hu sheep and Tibetan sheep. We obtained a total of 45.57 and 43.82 million sequencing reads, respectively. Two libraries mapped reads from 36.93 and 38.55 million reads after alignment to the reference sequences. 2108 DEGs were identified, including 1247 downregulated and 861 upregulated DEGs. GO and KEGG analyses of all DEGs demonstrated that pathways were enriched in the regulation of lipolysis in adipocytes and terms related to the chemokine signalling pathway, lysosomes, and glycosaminoglycan degradation. Eight genes were selected for validation by RT–qPCR. In addition, the transfection of BMP2 overexpression into preadipocytes resulted in increased PPAR-γ expression and expression. BMP2 potentially induces adipogenesis through LOX in preadipocytes. The number of lipid drops in BMP2 overexpression detected by oil red O staining was also greater than that in the negative control. CONCLUSION: In summary, these results showed that significant genes (BMP2, HOXA11, PPP1CC and LPIN1) are involved in the regulation of adipogenesis metabolism and suggested novel insights into metabolic molecules in sheep fat tails. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12864-022-08657-8. BioMed Central 2022-06-21 /pmc/articles/PMC9210821/ /pubmed/35725366 http://dx.doi.org/10.1186/s12864-022-08657-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Jin, Meilin Fei, Xiaojuan Li, Taotao Lu, Zengkui Chu, Mingxing Di, Ran He, Xiaoyun Wang, Xiangyu Wei, Caihong Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails |
title | Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails |
title_full | Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails |
title_fullStr | Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails |
title_full_unstemmed | Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails |
title_short | Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails |
title_sort | transcriptome study digs out bmp2 involved in adipogenesis in sheep tails |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9210821/ https://www.ncbi.nlm.nih.gov/pubmed/35725366 http://dx.doi.org/10.1186/s12864-022-08657-8 |
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