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Radiomics with 3-dimensional magnetic resonance fingerprinting: influence of dictionary design on repeatability and reproducibility of radiomic features
OBJECTIVES: We aimed to investigate the influence of magnetic resonance fingerprinting (MRF) dictionary design on radiomic features using in vivo human brain scans. METHODS: Scan-rescans of three-dimensional MRF and conventional T1-weighted imaging were performed on 21 healthy volunteers (9 males an...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9213334/ https://www.ncbi.nlm.nih.gov/pubmed/35304637 http://dx.doi.org/10.1007/s00330-022-08555-3 |
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author | Fujita, Shohei Hagiwara, Akifumi Yasaka, Koichiro Akai, Hiroyuki Kunimatsu, Akira Kiryu, Shigeru Fukunaga, Issei Kato, Shimpei Akashi, Toshiaki Kamagata, Koji Wada, Akihiko Abe, Osamu Aoki, Shigeki |
author_facet | Fujita, Shohei Hagiwara, Akifumi Yasaka, Koichiro Akai, Hiroyuki Kunimatsu, Akira Kiryu, Shigeru Fukunaga, Issei Kato, Shimpei Akashi, Toshiaki Kamagata, Koji Wada, Akihiko Abe, Osamu Aoki, Shigeki |
author_sort | Fujita, Shohei |
collection | PubMed |
description | OBJECTIVES: We aimed to investigate the influence of magnetic resonance fingerprinting (MRF) dictionary design on radiomic features using in vivo human brain scans. METHODS: Scan-rescans of three-dimensional MRF and conventional T1-weighted imaging were performed on 21 healthy volunteers (9 males and 12 females; mean age, 41.3 ± 14.6 years; age range, 22–72 years). Five patients with multiple sclerosis (3 males and 2 females; mean age, 41.2 ± 7.3 years; age range, 32–53 years) were also included. MRF data were reconstructed using various dictionaries with different step sizes. First- and second-order radiomic features were extracted from each dataset. Intra-dictionary repeatability and inter-dictionary reproducibility were evaluated using intraclass correlation coefficients (ICCs). Features with ICCs > 0.90 were considered acceptable. Relative changes were calculated to assess inter-dictionary biases. RESULTS: The overall scan-rescan ICCs of MRF-based radiomics ranged from 0.86 to 0.95, depending on dictionary step size. No significant differences were observed in the overall scan-rescan repeatability of MRF-based radiomic features and conventional T1-weighted imaging (p = 1.00). Intra-dictionary repeatability was insensitive to dictionary step size differences. MRF-based radiomic features varied among dictionaries (overall ICC for inter-dictionary reproducibility, 0.62–0.99), especially when step sizes were large. First-order and gray level co-occurrence matrix features were the most reproducible feature classes among different step size dictionaries. T1 map-derived radiomic features provided higher repeatability and reproducibility among dictionaries than those obtained with T2 maps. CONCLUSION: MRF-based radiomic features are highly repeatable in various dictionary step sizes. Caution is warranted when performing MRF-based radiomics using datasets containing maps generated from different dictionaries. KEY POINTS: • MRF-based radiomic features are highly repeatable in various dictionary step sizes. • Use of different MRF dictionaries may result in variable radiomic features, even when the same MRF acquisition data are used. • Caution is needed when performing radiomic analysis using data reconstructed from different dictionaries. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00330-022-08555-3. |
format | Online Article Text |
id | pubmed-9213334 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-92133342022-06-23 Radiomics with 3-dimensional magnetic resonance fingerprinting: influence of dictionary design on repeatability and reproducibility of radiomic features Fujita, Shohei Hagiwara, Akifumi Yasaka, Koichiro Akai, Hiroyuki Kunimatsu, Akira Kiryu, Shigeru Fukunaga, Issei Kato, Shimpei Akashi, Toshiaki Kamagata, Koji Wada, Akihiko Abe, Osamu Aoki, Shigeki Eur Radiol Imaging Informatics and Artificial Intelligence OBJECTIVES: We aimed to investigate the influence of magnetic resonance fingerprinting (MRF) dictionary design on radiomic features using in vivo human brain scans. METHODS: Scan-rescans of three-dimensional MRF and conventional T1-weighted imaging were performed on 21 healthy volunteers (9 males and 12 females; mean age, 41.3 ± 14.6 years; age range, 22–72 years). Five patients with multiple sclerosis (3 males and 2 females; mean age, 41.2 ± 7.3 years; age range, 32–53 years) were also included. MRF data were reconstructed using various dictionaries with different step sizes. First- and second-order radiomic features were extracted from each dataset. Intra-dictionary repeatability and inter-dictionary reproducibility were evaluated using intraclass correlation coefficients (ICCs). Features with ICCs > 0.90 were considered acceptable. Relative changes were calculated to assess inter-dictionary biases. RESULTS: The overall scan-rescan ICCs of MRF-based radiomics ranged from 0.86 to 0.95, depending on dictionary step size. No significant differences were observed in the overall scan-rescan repeatability of MRF-based radiomic features and conventional T1-weighted imaging (p = 1.00). Intra-dictionary repeatability was insensitive to dictionary step size differences. MRF-based radiomic features varied among dictionaries (overall ICC for inter-dictionary reproducibility, 0.62–0.99), especially when step sizes were large. First-order and gray level co-occurrence matrix features were the most reproducible feature classes among different step size dictionaries. T1 map-derived radiomic features provided higher repeatability and reproducibility among dictionaries than those obtained with T2 maps. CONCLUSION: MRF-based radiomic features are highly repeatable in various dictionary step sizes. Caution is warranted when performing MRF-based radiomics using datasets containing maps generated from different dictionaries. KEY POINTS: • MRF-based radiomic features are highly repeatable in various dictionary step sizes. • Use of different MRF dictionaries may result in variable radiomic features, even when the same MRF acquisition data are used. • Caution is needed when performing radiomic analysis using data reconstructed from different dictionaries. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00330-022-08555-3. Springer Berlin Heidelberg 2022-03-18 2022 /pmc/articles/PMC9213334/ /pubmed/35304637 http://dx.doi.org/10.1007/s00330-022-08555-3 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Imaging Informatics and Artificial Intelligence Fujita, Shohei Hagiwara, Akifumi Yasaka, Koichiro Akai, Hiroyuki Kunimatsu, Akira Kiryu, Shigeru Fukunaga, Issei Kato, Shimpei Akashi, Toshiaki Kamagata, Koji Wada, Akihiko Abe, Osamu Aoki, Shigeki Radiomics with 3-dimensional magnetic resonance fingerprinting: influence of dictionary design on repeatability and reproducibility of radiomic features |
title | Radiomics with 3-dimensional magnetic resonance fingerprinting: influence of dictionary design on repeatability and reproducibility of radiomic features |
title_full | Radiomics with 3-dimensional magnetic resonance fingerprinting: influence of dictionary design on repeatability and reproducibility of radiomic features |
title_fullStr | Radiomics with 3-dimensional magnetic resonance fingerprinting: influence of dictionary design on repeatability and reproducibility of radiomic features |
title_full_unstemmed | Radiomics with 3-dimensional magnetic resonance fingerprinting: influence of dictionary design on repeatability and reproducibility of radiomic features |
title_short | Radiomics with 3-dimensional magnetic resonance fingerprinting: influence of dictionary design on repeatability and reproducibility of radiomic features |
title_sort | radiomics with 3-dimensional magnetic resonance fingerprinting: influence of dictionary design on repeatability and reproducibility of radiomic features |
topic | Imaging Informatics and Artificial Intelligence |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9213334/ https://www.ncbi.nlm.nih.gov/pubmed/35304637 http://dx.doi.org/10.1007/s00330-022-08555-3 |
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