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Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily

Hydrothermal vents have been key to our understanding of the limits of life, and the metabolic and phylogenetic diversity of thermophilic organisms. Here we used environmental metagenomics combined with analysis of physicochemical data and 16S rRNA gene amplicons to characterize the sediment-hosted...

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Autores principales: Speth, Daan R., Yu, Feiqiao B., Connon, Stephanie A., Lim, Sujung, Magyar, John S., Peña-Salinas, Manet E., Quake, Stephen R., Orphan, Victoria J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9213671/
https://www.ncbi.nlm.nih.gov/pubmed/35352015
http://dx.doi.org/10.1038/s41396-022-01222-x
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author Speth, Daan R.
Yu, Feiqiao B.
Connon, Stephanie A.
Lim, Sujung
Magyar, John S.
Peña-Salinas, Manet E.
Quake, Stephen R.
Orphan, Victoria J.
author_facet Speth, Daan R.
Yu, Feiqiao B.
Connon, Stephanie A.
Lim, Sujung
Magyar, John S.
Peña-Salinas, Manet E.
Quake, Stephen R.
Orphan, Victoria J.
author_sort Speth, Daan R.
collection PubMed
description Hydrothermal vents have been key to our understanding of the limits of life, and the metabolic and phylogenetic diversity of thermophilic organisms. Here we used environmental metagenomics combined with analysis of physicochemical data and 16S rRNA gene amplicons to characterize the sediment-hosted microorganisms at the recently discovered Auka vents in the Gulf of California. We recovered 325 metagenome assembled genomes (MAGs) representing 54 phyla, over 30% of those currently known, showing the microbial community in Auka hydrothermal sediments is highly diverse. 16S rRNA gene amplicon screening of 224 sediment samples across the vent field indicates that the MAGs retrieved from a single site are representative of the microbial community in the vent field sediments. Metabolic reconstruction of a vent-specific, deeply branching clade within the Desulfobacterota suggests these organisms metabolize sulfur using novel octaheme cytochrome-c proteins related to hydroxylamine oxidoreductase. Community-wide comparison between Auka MAGs and MAGs from Guaymas Basin revealed a remarkable 20% species-level overlap, suggestive of long-distance species transfer over 400 km and subsequent sediment colonization. Optimal growth temperature prediction on the Auka MAGs, and thousands of reference genomes, shows that thermophily is a trait that has evolved frequently. Taken together, our Auka vent field results offer new perspectives on our understanding of hydrothermal vent microbiology.
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spelling pubmed-92136712022-06-23 Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily Speth, Daan R. Yu, Feiqiao B. Connon, Stephanie A. Lim, Sujung Magyar, John S. Peña-Salinas, Manet E. Quake, Stephen R. Orphan, Victoria J. ISME J Article Hydrothermal vents have been key to our understanding of the limits of life, and the metabolic and phylogenetic diversity of thermophilic organisms. Here we used environmental metagenomics combined with analysis of physicochemical data and 16S rRNA gene amplicons to characterize the sediment-hosted microorganisms at the recently discovered Auka vents in the Gulf of California. We recovered 325 metagenome assembled genomes (MAGs) representing 54 phyla, over 30% of those currently known, showing the microbial community in Auka hydrothermal sediments is highly diverse. 16S rRNA gene amplicon screening of 224 sediment samples across the vent field indicates that the MAGs retrieved from a single site are representative of the microbial community in the vent field sediments. Metabolic reconstruction of a vent-specific, deeply branching clade within the Desulfobacterota suggests these organisms metabolize sulfur using novel octaheme cytochrome-c proteins related to hydroxylamine oxidoreductase. Community-wide comparison between Auka MAGs and MAGs from Guaymas Basin revealed a remarkable 20% species-level overlap, suggestive of long-distance species transfer over 400 km and subsequent sediment colonization. Optimal growth temperature prediction on the Auka MAGs, and thousands of reference genomes, shows that thermophily is a trait that has evolved frequently. Taken together, our Auka vent field results offer new perspectives on our understanding of hydrothermal vent microbiology. Nature Publishing Group UK 2022-03-28 2022-07 /pmc/articles/PMC9213671/ /pubmed/35352015 http://dx.doi.org/10.1038/s41396-022-01222-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Speth, Daan R.
Yu, Feiqiao B.
Connon, Stephanie A.
Lim, Sujung
Magyar, John S.
Peña-Salinas, Manet E.
Quake, Stephen R.
Orphan, Victoria J.
Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily
title Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily
title_full Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily
title_fullStr Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily
title_full_unstemmed Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily
title_short Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily
title_sort microbial communities of auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9213671/
https://www.ncbi.nlm.nih.gov/pubmed/35352015
http://dx.doi.org/10.1038/s41396-022-01222-x
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