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Unraveling the morphological complexity of two-dimensional macromolecules

2D macromolecules, such as graphene and graphene oxide, possess a rich spectrum of conformational phases. However, their morphological classification has only been discussed by visual inspection, where the physics of deformation and surface contact cannot be resolved. We employ machine learning meth...

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Detalles Bibliográficos
Autores principales: Zhao, Yingjie, Qin, Jianshu, Wang, Shijun, Xu, Zhiping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9214330/
https://www.ncbi.nlm.nih.gov/pubmed/35755877
http://dx.doi.org/10.1016/j.patter.2022.100497
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author Zhao, Yingjie
Qin, Jianshu
Wang, Shijun
Xu, Zhiping
author_facet Zhao, Yingjie
Qin, Jianshu
Wang, Shijun
Xu, Zhiping
author_sort Zhao, Yingjie
collection PubMed
description 2D macromolecules, such as graphene and graphene oxide, possess a rich spectrum of conformational phases. However, their morphological classification has only been discussed by visual inspection, where the physics of deformation and surface contact cannot be resolved. We employ machine learning methods to address this problem by exploring samples generated by molecular simulations. Features such as metric changes, curvature, conformational anisotropy and surface contact are extracted. Unsupervised learning classifies the morphologies into the quasi-flat, folded, crumpled phases and interphases using geometrical and topological labels or the principal features of the 2D energy map. The results are fed into subsequent supervised learning for phase characterization. The performance of data-driven models is improved notably by integrating the physics of geometrical deformation and topological contact. The classification and feature extraction characterize the microstructures of their condensed phases and the molecular processes of adsorption and transport, comprehending the processing-microstructures-performance relation in applications.
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spelling pubmed-92143302022-06-23 Unraveling the morphological complexity of two-dimensional macromolecules Zhao, Yingjie Qin, Jianshu Wang, Shijun Xu, Zhiping Patterns (N Y) Article 2D macromolecules, such as graphene and graphene oxide, possess a rich spectrum of conformational phases. However, their morphological classification has only been discussed by visual inspection, where the physics of deformation and surface contact cannot be resolved. We employ machine learning methods to address this problem by exploring samples generated by molecular simulations. Features such as metric changes, curvature, conformational anisotropy and surface contact are extracted. Unsupervised learning classifies the morphologies into the quasi-flat, folded, crumpled phases and interphases using geometrical and topological labels or the principal features of the 2D energy map. The results are fed into subsequent supervised learning for phase characterization. The performance of data-driven models is improved notably by integrating the physics of geometrical deformation and topological contact. The classification and feature extraction characterize the microstructures of their condensed phases and the molecular processes of adsorption and transport, comprehending the processing-microstructures-performance relation in applications. Elsevier 2022-04-22 /pmc/articles/PMC9214330/ /pubmed/35755877 http://dx.doi.org/10.1016/j.patter.2022.100497 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhao, Yingjie
Qin, Jianshu
Wang, Shijun
Xu, Zhiping
Unraveling the morphological complexity of two-dimensional macromolecules
title Unraveling the morphological complexity of two-dimensional macromolecules
title_full Unraveling the morphological complexity of two-dimensional macromolecules
title_fullStr Unraveling the morphological complexity of two-dimensional macromolecules
title_full_unstemmed Unraveling the morphological complexity of two-dimensional macromolecules
title_short Unraveling the morphological complexity of two-dimensional macromolecules
title_sort unraveling the morphological complexity of two-dimensional macromolecules
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9214330/
https://www.ncbi.nlm.nih.gov/pubmed/35755877
http://dx.doi.org/10.1016/j.patter.2022.100497
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