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Machine Learning–Based Prediction Models for Different Clinical Risks in Different Hospitals: Evaluation of Live Performance
BACKGROUND: Machine learning algorithms are currently used in a wide array of clinical domains to produce models that can predict clinical risk events. Most models are developed and evaluated with retrospective data, very few are evaluated in a clinical workflow, and even fewer report performances i...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
JMIR Publications
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9214618/ https://www.ncbi.nlm.nih.gov/pubmed/35502887 http://dx.doi.org/10.2196/34295 |
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author | Sun, Hong Depraetere, Kristof Meesseman, Laurent Cabanillas Silva, Patricia Szymanowsky, Ralph Fliegenschmidt, Janis Hulde, Nikolai von Dossow, Vera Vanbiervliet, Martijn De Baerdemaeker, Jos Roccaro-Waldmeyer, Diana M Stieg, Jörg Domínguez Hidalgo, Manuel Dahlweid, Fried-Michael |
author_facet | Sun, Hong Depraetere, Kristof Meesseman, Laurent Cabanillas Silva, Patricia Szymanowsky, Ralph Fliegenschmidt, Janis Hulde, Nikolai von Dossow, Vera Vanbiervliet, Martijn De Baerdemaeker, Jos Roccaro-Waldmeyer, Diana M Stieg, Jörg Domínguez Hidalgo, Manuel Dahlweid, Fried-Michael |
author_sort | Sun, Hong |
collection | PubMed |
description | BACKGROUND: Machine learning algorithms are currently used in a wide array of clinical domains to produce models that can predict clinical risk events. Most models are developed and evaluated with retrospective data, very few are evaluated in a clinical workflow, and even fewer report performances in different hospitals. In this study, we provide detailed evaluations of clinical risk prediction models in live clinical workflows for three different use cases in three different hospitals. OBJECTIVE: The main objective of this study was to evaluate clinical risk prediction models in live clinical workflows and compare their performance in these setting with their performance when using retrospective data. We also aimed at generalizing the results by applying our investigation to three different use cases in three different hospitals. METHODS: We trained clinical risk prediction models for three use cases (ie, delirium, sepsis, and acute kidney injury) in three different hospitals with retrospective data. We used machine learning and, specifically, deep learning to train models that were based on the Transformer model. The models were trained using a calibration tool that is common for all hospitals and use cases. The models had a common design but were calibrated using each hospital’s specific data. The models were deployed in these three hospitals and used in daily clinical practice. The predictions made by these models were logged and correlated with the diagnosis at discharge. We compared their performance with evaluations on retrospective data and conducted cross-hospital evaluations. RESULTS: The performance of the prediction models with data from live clinical workflows was similar to the performance with retrospective data. The average value of the area under the receiver operating characteristic curve (AUROC) decreased slightly by 0.6 percentage points (from 94.8% to 94.2% at discharge). The cross-hospital evaluations exhibited severely reduced performance: the average AUROC decreased by 8 percentage points (from 94.2% to 86.3% at discharge), which indicates the importance of model calibration with data from the deployment hospital. CONCLUSIONS: Calibrating the prediction model with data from different deployment hospitals led to good performance in live settings. The performance degradation in the cross-hospital evaluation identified limitations in developing a generic model for different hospitals. Designing a generic process for model development to generate specialized prediction models for each hospital guarantees model performance in different hospitals. |
format | Online Article Text |
id | pubmed-9214618 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | JMIR Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-92146182022-06-23 Machine Learning–Based Prediction Models for Different Clinical Risks in Different Hospitals: Evaluation of Live Performance Sun, Hong Depraetere, Kristof Meesseman, Laurent Cabanillas Silva, Patricia Szymanowsky, Ralph Fliegenschmidt, Janis Hulde, Nikolai von Dossow, Vera Vanbiervliet, Martijn De Baerdemaeker, Jos Roccaro-Waldmeyer, Diana M Stieg, Jörg Domínguez Hidalgo, Manuel Dahlweid, Fried-Michael J Med Internet Res Original Paper BACKGROUND: Machine learning algorithms are currently used in a wide array of clinical domains to produce models that can predict clinical risk events. Most models are developed and evaluated with retrospective data, very few are evaluated in a clinical workflow, and even fewer report performances in different hospitals. In this study, we provide detailed evaluations of clinical risk prediction models in live clinical workflows for three different use cases in three different hospitals. OBJECTIVE: The main objective of this study was to evaluate clinical risk prediction models in live clinical workflows and compare their performance in these setting with their performance when using retrospective data. We also aimed at generalizing the results by applying our investigation to three different use cases in three different hospitals. METHODS: We trained clinical risk prediction models for three use cases (ie, delirium, sepsis, and acute kidney injury) in three different hospitals with retrospective data. We used machine learning and, specifically, deep learning to train models that were based on the Transformer model. The models were trained using a calibration tool that is common for all hospitals and use cases. The models had a common design but were calibrated using each hospital’s specific data. The models were deployed in these three hospitals and used in daily clinical practice. The predictions made by these models were logged and correlated with the diagnosis at discharge. We compared their performance with evaluations on retrospective data and conducted cross-hospital evaluations. RESULTS: The performance of the prediction models with data from live clinical workflows was similar to the performance with retrospective data. The average value of the area under the receiver operating characteristic curve (AUROC) decreased slightly by 0.6 percentage points (from 94.8% to 94.2% at discharge). The cross-hospital evaluations exhibited severely reduced performance: the average AUROC decreased by 8 percentage points (from 94.2% to 86.3% at discharge), which indicates the importance of model calibration with data from the deployment hospital. CONCLUSIONS: Calibrating the prediction model with data from different deployment hospitals led to good performance in live settings. The performance degradation in the cross-hospital evaluation identified limitations in developing a generic model for different hospitals. Designing a generic process for model development to generate specialized prediction models for each hospital guarantees model performance in different hospitals. JMIR Publications 2022-06-07 /pmc/articles/PMC9214618/ /pubmed/35502887 http://dx.doi.org/10.2196/34295 Text en ©Hong Sun, Kristof Depraetere, Laurent Meesseman, Patricia Cabanillas Silva, Ralph Szymanowsky, Janis Fliegenschmidt, Nikolai Hulde, Vera von Dossow, Martijn Vanbiervliet, Jos De Baerdemaeker, Diana M Roccaro-Waldmeyer, Jörg Stieg, Manuel Domínguez Hidalgo, Fried-Michael Dahlweid. Originally published in the Journal of Medical Internet Research (https://www.jmir.org), 07.06.2022. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in the Journal of Medical Internet Research, is properly cited. The complete bibliographic information, a link to the original publication on https://www.jmir.org/, as well as this copyright and license information must be included. |
spellingShingle | Original Paper Sun, Hong Depraetere, Kristof Meesseman, Laurent Cabanillas Silva, Patricia Szymanowsky, Ralph Fliegenschmidt, Janis Hulde, Nikolai von Dossow, Vera Vanbiervliet, Martijn De Baerdemaeker, Jos Roccaro-Waldmeyer, Diana M Stieg, Jörg Domínguez Hidalgo, Manuel Dahlweid, Fried-Michael Machine Learning–Based Prediction Models for Different Clinical Risks in Different Hospitals: Evaluation of Live Performance |
title | Machine Learning–Based Prediction Models for Different Clinical Risks in Different Hospitals: Evaluation of Live Performance |
title_full | Machine Learning–Based Prediction Models for Different Clinical Risks in Different Hospitals: Evaluation of Live Performance |
title_fullStr | Machine Learning–Based Prediction Models for Different Clinical Risks in Different Hospitals: Evaluation of Live Performance |
title_full_unstemmed | Machine Learning–Based Prediction Models for Different Clinical Risks in Different Hospitals: Evaluation of Live Performance |
title_short | Machine Learning–Based Prediction Models for Different Clinical Risks in Different Hospitals: Evaluation of Live Performance |
title_sort | machine learning–based prediction models for different clinical risks in different hospitals: evaluation of live performance |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9214618/ https://www.ncbi.nlm.nih.gov/pubmed/35502887 http://dx.doi.org/10.2196/34295 |
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