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SwissBioPics—an interactive library of cell images for the visualization of subcellular location data

SwissBioPics (www.swissbiopics.org) is a freely available resource of interactive, high-resolution cell images designed for the visualization of subcellular location data. SwissBioPics provides images describing cell types from all kingdoms of life—from the specialized muscle, neuronal and epithelia...

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Autores principales: Le Mercier, Philippe, Bolleman, Jerven, de Castro, Edouard, Gasteiger, Elisabeth, Bansal, Parit, Auchincloss, Andrea H, Boutet, Emmanuel, Breuza, Lionel, Casals-Casas, Cristina, Estreicher, Anne, Feuermann, Marc, Lieberherr, Damien, Rivoire, Catherine, Pedruzzi, Ivo, Redaschi, Nicole, Bridge, Alan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9216577/
https://www.ncbi.nlm.nih.gov/pubmed/35411389
http://dx.doi.org/10.1093/database/baac026
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author Le Mercier, Philippe
Bolleman, Jerven
de Castro, Edouard
Gasteiger, Elisabeth
Bansal, Parit
Auchincloss, Andrea H
Boutet, Emmanuel
Breuza, Lionel
Casals-Casas, Cristina
Estreicher, Anne
Feuermann, Marc
Lieberherr, Damien
Rivoire, Catherine
Pedruzzi, Ivo
Redaschi, Nicole
Bridge, Alan
author_facet Le Mercier, Philippe
Bolleman, Jerven
de Castro, Edouard
Gasteiger, Elisabeth
Bansal, Parit
Auchincloss, Andrea H
Boutet, Emmanuel
Breuza, Lionel
Casals-Casas, Cristina
Estreicher, Anne
Feuermann, Marc
Lieberherr, Damien
Rivoire, Catherine
Pedruzzi, Ivo
Redaschi, Nicole
Bridge, Alan
author_sort Le Mercier, Philippe
collection PubMed
description SwissBioPics (www.swissbiopics.org) is a freely available resource of interactive, high-resolution cell images designed for the visualization of subcellular location data. SwissBioPics provides images describing cell types from all kingdoms of life—from the specialized muscle, neuronal and epithelial cells of animals, to the rods, cocci, clubs and spirals of prokaryotes. All cell images in SwissBioPics are drawn in Scalable Vector Graphics (SVG), with each subcellular location tagged with a unique identifier from the controlled vocabulary of subcellular locations and organelles of UniProt (https://www.uniprot.org/locations/). Users can search and explore SwissBioPics cell images through our website, which provides a platform for users to learn more about how cells are organized. A web component allows developers to embed SwissBioPics images in their own websites, using the associated JavaScript and a styling template, and to highlight subcellular locations and organelles by simply providing the web component with the appropriate identifier(s) from the UniProt-controlled vocabulary or the ‘Cellular Component’ branch of the Gene Ontology (www.geneontology.org), as well as an organism identifier from the National Center for Biotechnology Information taxonomy (https://www.ncbi.nlm.nih.gov/taxonomy). The UniProt website now uses SwissBioPics to visualize the subcellular locations and organelles where proteins function. SwissBioPics is freely available for anyone to use under a Creative Commons Attribution 4.0 International (CC BY 4.0) license. DATABASE URL: www.swissbiopics.org
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spelling pubmed-92165772022-06-23 SwissBioPics—an interactive library of cell images for the visualization of subcellular location data Le Mercier, Philippe Bolleman, Jerven de Castro, Edouard Gasteiger, Elisabeth Bansal, Parit Auchincloss, Andrea H Boutet, Emmanuel Breuza, Lionel Casals-Casas, Cristina Estreicher, Anne Feuermann, Marc Lieberherr, Damien Rivoire, Catherine Pedruzzi, Ivo Redaschi, Nicole Bridge, Alan Database (Oxford) Original Article SwissBioPics (www.swissbiopics.org) is a freely available resource of interactive, high-resolution cell images designed for the visualization of subcellular location data. SwissBioPics provides images describing cell types from all kingdoms of life—from the specialized muscle, neuronal and epithelial cells of animals, to the rods, cocci, clubs and spirals of prokaryotes. All cell images in SwissBioPics are drawn in Scalable Vector Graphics (SVG), with each subcellular location tagged with a unique identifier from the controlled vocabulary of subcellular locations and organelles of UniProt (https://www.uniprot.org/locations/). Users can search and explore SwissBioPics cell images through our website, which provides a platform for users to learn more about how cells are organized. A web component allows developers to embed SwissBioPics images in their own websites, using the associated JavaScript and a styling template, and to highlight subcellular locations and organelles by simply providing the web component with the appropriate identifier(s) from the UniProt-controlled vocabulary or the ‘Cellular Component’ branch of the Gene Ontology (www.geneontology.org), as well as an organism identifier from the National Center for Biotechnology Information taxonomy (https://www.ncbi.nlm.nih.gov/taxonomy). The UniProt website now uses SwissBioPics to visualize the subcellular locations and organelles where proteins function. SwissBioPics is freely available for anyone to use under a Creative Commons Attribution 4.0 International (CC BY 4.0) license. DATABASE URL: www.swissbiopics.org Oxford University Press 2022-04-12 /pmc/articles/PMC9216577/ /pubmed/35411389 http://dx.doi.org/10.1093/database/baac026 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Le Mercier, Philippe
Bolleman, Jerven
de Castro, Edouard
Gasteiger, Elisabeth
Bansal, Parit
Auchincloss, Andrea H
Boutet, Emmanuel
Breuza, Lionel
Casals-Casas, Cristina
Estreicher, Anne
Feuermann, Marc
Lieberherr, Damien
Rivoire, Catherine
Pedruzzi, Ivo
Redaschi, Nicole
Bridge, Alan
SwissBioPics—an interactive library of cell images for the visualization of subcellular location data
title SwissBioPics—an interactive library of cell images for the visualization of subcellular location data
title_full SwissBioPics—an interactive library of cell images for the visualization of subcellular location data
title_fullStr SwissBioPics—an interactive library of cell images for the visualization of subcellular location data
title_full_unstemmed SwissBioPics—an interactive library of cell images for the visualization of subcellular location data
title_short SwissBioPics—an interactive library of cell images for the visualization of subcellular location data
title_sort swissbiopics—an interactive library of cell images for the visualization of subcellular location data
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9216577/
https://www.ncbi.nlm.nih.gov/pubmed/35411389
http://dx.doi.org/10.1093/database/baac026
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