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Identification and Characterization of Shaker K(+) Channel Gene Family in Foxtail Millet (Setaria italica) and Their Role in Stress Response

Potassium (K(+)) is one of the indispensable elements in plant growth and development. The Shaker K(+) channel protein family is involved in plant K(+) uptake and distribution. Foxtail millet (Setaria italica), as an important crop, has strong tolerance and adaptability to abiotic stresses. However,...

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Autores principales: Zhang, Ben, Guo, Yue, Wang, Hui, Wang, Xiaoxia, Lv, Mengtao, Yang, Pu, Zhang, Lizhen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9218596/
https://www.ncbi.nlm.nih.gov/pubmed/35755660
http://dx.doi.org/10.3389/fpls.2022.907635
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author Zhang, Ben
Guo, Yue
Wang, Hui
Wang, Xiaoxia
Lv, Mengtao
Yang, Pu
Zhang, Lizhen
author_facet Zhang, Ben
Guo, Yue
Wang, Hui
Wang, Xiaoxia
Lv, Mengtao
Yang, Pu
Zhang, Lizhen
author_sort Zhang, Ben
collection PubMed
description Potassium (K(+)) is one of the indispensable elements in plant growth and development. The Shaker K(+) channel protein family is involved in plant K(+) uptake and distribution. Foxtail millet (Setaria italica), as an important crop, has strong tolerance and adaptability to abiotic stresses. However, no systematic study focused on the Shaker K(+) channel family in foxtail millet. Here, ten Shaker K(+) channel genes in foxtail millet were identified and divided into five groups through phylogenetic analysis. Gene structures, chromosome locations, cis-acting regulatory elements in promoter, and post-translation modification sites of Shaker K(+) channels were analyzed. In silico analysis of transcript level demonstrated that the expression of Shaker K(+) channel genes was tissue or developmental stage specific. The transcription levels of Shaker K(+) channel genes in foxtail millet under different abiotic stresses (cold, heat, NaCl, and PEG) and phytohormones (6-BA, BR, MJ, IAA, NAA, GA3, SA, and ABA) treatments at 0, 12, and 24 h were detected by qRT-PCR. The results showed that SiAKT1, SiKAT3, SiGORK, and SiSKOR were worth further research due to their significant responses after most treatments. The yeast complementation assay verified the inward K(+) transport activities of detectable Shaker K(+) channels. Finally, we found interactions between SiKAT2 and SiSNARE proteins. Compared to research in Arabidopsis, our results showed a difference in SYP121 related Shaker K(+) channel regulation mechanism in foxtail millet. Our results indicate that Shaker K(+) channels play important roles in foxtail millet and provide theoretical support for further exploring the K(+) absorption mechanism of foxtail millet under abiotic stress.
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spelling pubmed-92185962022-06-24 Identification and Characterization of Shaker K(+) Channel Gene Family in Foxtail Millet (Setaria italica) and Their Role in Stress Response Zhang, Ben Guo, Yue Wang, Hui Wang, Xiaoxia Lv, Mengtao Yang, Pu Zhang, Lizhen Front Plant Sci Plant Science Potassium (K(+)) is one of the indispensable elements in plant growth and development. The Shaker K(+) channel protein family is involved in plant K(+) uptake and distribution. Foxtail millet (Setaria italica), as an important crop, has strong tolerance and adaptability to abiotic stresses. However, no systematic study focused on the Shaker K(+) channel family in foxtail millet. Here, ten Shaker K(+) channel genes in foxtail millet were identified and divided into five groups through phylogenetic analysis. Gene structures, chromosome locations, cis-acting regulatory elements in promoter, and post-translation modification sites of Shaker K(+) channels were analyzed. In silico analysis of transcript level demonstrated that the expression of Shaker K(+) channel genes was tissue or developmental stage specific. The transcription levels of Shaker K(+) channel genes in foxtail millet under different abiotic stresses (cold, heat, NaCl, and PEG) and phytohormones (6-BA, BR, MJ, IAA, NAA, GA3, SA, and ABA) treatments at 0, 12, and 24 h were detected by qRT-PCR. The results showed that SiAKT1, SiKAT3, SiGORK, and SiSKOR were worth further research due to their significant responses after most treatments. The yeast complementation assay verified the inward K(+) transport activities of detectable Shaker K(+) channels. Finally, we found interactions between SiKAT2 and SiSNARE proteins. Compared to research in Arabidopsis, our results showed a difference in SYP121 related Shaker K(+) channel regulation mechanism in foxtail millet. Our results indicate that Shaker K(+) channels play important roles in foxtail millet and provide theoretical support for further exploring the K(+) absorption mechanism of foxtail millet under abiotic stress. Frontiers Media S.A. 2022-06-09 /pmc/articles/PMC9218596/ /pubmed/35755660 http://dx.doi.org/10.3389/fpls.2022.907635 Text en Copyright © 2022 Zhang, Guo, Wang, Wang, Lv, Yang and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Zhang, Ben
Guo, Yue
Wang, Hui
Wang, Xiaoxia
Lv, Mengtao
Yang, Pu
Zhang, Lizhen
Identification and Characterization of Shaker K(+) Channel Gene Family in Foxtail Millet (Setaria italica) and Their Role in Stress Response
title Identification and Characterization of Shaker K(+) Channel Gene Family in Foxtail Millet (Setaria italica) and Their Role in Stress Response
title_full Identification and Characterization of Shaker K(+) Channel Gene Family in Foxtail Millet (Setaria italica) and Their Role in Stress Response
title_fullStr Identification and Characterization of Shaker K(+) Channel Gene Family in Foxtail Millet (Setaria italica) and Their Role in Stress Response
title_full_unstemmed Identification and Characterization of Shaker K(+) Channel Gene Family in Foxtail Millet (Setaria italica) and Their Role in Stress Response
title_short Identification and Characterization of Shaker K(+) Channel Gene Family in Foxtail Millet (Setaria italica) and Their Role in Stress Response
title_sort identification and characterization of shaker k(+) channel gene family in foxtail millet (setaria italica) and their role in stress response
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9218596/
https://www.ncbi.nlm.nih.gov/pubmed/35755660
http://dx.doi.org/10.3389/fpls.2022.907635
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