Cargando…

Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database

Experimental tools and resources, such as animal models, cell lines, antibodies, genetic reagents and biobanks, are key ingredients in biomedical research. Investigators face multiple challenges when trying to understand the availability, applicability and accessibility of these tools. A major chall...

Descripción completa

Detalles Bibliográficos
Autores principales: Clayton, Ashley, DeFelice, Mialy, Zalmanek, Brynn, Hodgson, Jay, Morin, Caroline, Simon, Stockard, Bletz, Julie A, Eddy, James A, Nikolov, Milen, Banerjee, Jineta, Vinnakota, Kalyan, Marasca, Marco, Boske, Kevin J, Hoff, Bruce, Bradic, Ljubomir, Kim, YooRi, Goss, James R, Allaway, Robert J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9218993/
https://www.ncbi.nlm.nih.gov/pubmed/35735230
http://dx.doi.org/10.1093/database/baac045
_version_ 1784732013918420992
author Clayton, Ashley
DeFelice, Mialy
Zalmanek, Brynn
Hodgson, Jay
Morin, Caroline
Simon, Stockard
Bletz, Julie A
Eddy, James A
Nikolov, Milen
Banerjee, Jineta
Vinnakota, Kalyan
Marasca, Marco
Boske, Kevin J
Hoff, Bruce
Bradic, Ljubomir
Kim, YooRi
Goss, James R
Allaway, Robert J
author_facet Clayton, Ashley
DeFelice, Mialy
Zalmanek, Brynn
Hodgson, Jay
Morin, Caroline
Simon, Stockard
Bletz, Julie A
Eddy, James A
Nikolov, Milen
Banerjee, Jineta
Vinnakota, Kalyan
Marasca, Marco
Boske, Kevin J
Hoff, Bruce
Bradic, Ljubomir
Kim, YooRi
Goss, James R
Allaway, Robert J
author_sort Clayton, Ashley
collection PubMed
description Experimental tools and resources, such as animal models, cell lines, antibodies, genetic reagents and biobanks, are key ingredients in biomedical research. Investigators face multiple challenges when trying to understand the availability, applicability and accessibility of these tools. A major challenge is keeping up with current information about the numerous tools available for a particular research problem. A variety of disease-agnostic projects such as the Mouse Genome Informatics database and the Resource Identification Initiative curate a number of types of research tools. Here, we describe our efforts to build upon these resources to develop a disease-specific research tool resource for the neurofibromatosis (NF) research community. This resource, the NF Research Tools Database, is an open-access database that enables the exploration and discovery of information about NF type 1-relevant animal models, cell lines, antibodies, genetic reagents and biobanks. Users can search and explore tools, obtain detailed information about each tool as well as read and contribute their observations about the performance, reliability and characteristics of tools in the database. NF researchers will be able to use the NF Research Tools Database to promote, discover, share, reuse and characterize research tools, with the goal of advancing NF research. Database URL: https://tools.nf.synapse.org/.
format Online
Article
Text
id pubmed-9218993
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-92189932022-06-28 Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database Clayton, Ashley DeFelice, Mialy Zalmanek, Brynn Hodgson, Jay Morin, Caroline Simon, Stockard Bletz, Julie A Eddy, James A Nikolov, Milen Banerjee, Jineta Vinnakota, Kalyan Marasca, Marco Boske, Kevin J Hoff, Bruce Bradic, Ljubomir Kim, YooRi Goss, James R Allaway, Robert J Database (Oxford) Original Article Experimental tools and resources, such as animal models, cell lines, antibodies, genetic reagents and biobanks, are key ingredients in biomedical research. Investigators face multiple challenges when trying to understand the availability, applicability and accessibility of these tools. A major challenge is keeping up with current information about the numerous tools available for a particular research problem. A variety of disease-agnostic projects such as the Mouse Genome Informatics database and the Resource Identification Initiative curate a number of types of research tools. Here, we describe our efforts to build upon these resources to develop a disease-specific research tool resource for the neurofibromatosis (NF) research community. This resource, the NF Research Tools Database, is an open-access database that enables the exploration and discovery of information about NF type 1-relevant animal models, cell lines, antibodies, genetic reagents and biobanks. Users can search and explore tools, obtain detailed information about each tool as well as read and contribute their observations about the performance, reliability and characteristics of tools in the database. NF researchers will be able to use the NF Research Tools Database to promote, discover, share, reuse and characterize research tools, with the goal of advancing NF research. Database URL: https://tools.nf.synapse.org/. Oxford University Press 2022-06-23 /pmc/articles/PMC9218993/ /pubmed/35735230 http://dx.doi.org/10.1093/database/baac045 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Original Article
Clayton, Ashley
DeFelice, Mialy
Zalmanek, Brynn
Hodgson, Jay
Morin, Caroline
Simon, Stockard
Bletz, Julie A
Eddy, James A
Nikolov, Milen
Banerjee, Jineta
Vinnakota, Kalyan
Marasca, Marco
Boske, Kevin J
Hoff, Bruce
Bradic, Ljubomir
Kim, YooRi
Goss, James R
Allaway, Robert J
Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database
title Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database
title_full Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database
title_fullStr Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database
title_full_unstemmed Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database
title_short Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database
title_sort centralizing neurofibromatosis experimental tool knowledge with the nf research tools database
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9218993/
https://www.ncbi.nlm.nih.gov/pubmed/35735230
http://dx.doi.org/10.1093/database/baac045
work_keys_str_mv AT claytonashley centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT defelicemialy centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT zalmanekbrynn centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT hodgsonjay centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT morincaroline centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT simonstockard centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT bletzjuliea centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT eddyjamesa centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT nikolovmilen centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT banerjeejineta centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT vinnakotakalyan centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT marascamarco centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT boskekevinj centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT hoffbruce centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT bradicljubomir centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT kimyoori centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT gossjamesr centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase
AT allawayrobertj centralizingneurofibromatosisexperimentaltoolknowledgewiththenfresearchtoolsdatabase