Cargando…

A Comparison of Computer-Aided Diagnosis Schemes Optimized Using Radiomics and Deep Transfer Learning Methods

Objective: Radiomics and deep transfer learning are two popular technologies used to develop computer-aided detection and diagnosis (CAD) schemes of medical images. This study aims to investigate and to compare the advantages and the potential limitations of applying these two technologies in develo...

Descripción completa

Detalles Bibliográficos
Autores principales: Danala, Gopichandh, Maryada, Sai Kiran, Islam, Warid, Faiz, Rowzat, Jones, Meredith, Qiu, Yuchen, Zheng, Bin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9219621/
https://www.ncbi.nlm.nih.gov/pubmed/35735499
http://dx.doi.org/10.3390/bioengineering9060256
_version_ 1784732157870080000
author Danala, Gopichandh
Maryada, Sai Kiran
Islam, Warid
Faiz, Rowzat
Jones, Meredith
Qiu, Yuchen
Zheng, Bin
author_facet Danala, Gopichandh
Maryada, Sai Kiran
Islam, Warid
Faiz, Rowzat
Jones, Meredith
Qiu, Yuchen
Zheng, Bin
author_sort Danala, Gopichandh
collection PubMed
description Objective: Radiomics and deep transfer learning are two popular technologies used to develop computer-aided detection and diagnosis (CAD) schemes of medical images. This study aims to investigate and to compare the advantages and the potential limitations of applying these two technologies in developing CAD schemes. Methods: A relatively large and diverse retrospective dataset including 3000 digital mammograms was assembled in which 1496 images depicted malignant lesions and 1504 images depicted benign lesions. Two CAD schemes were developed to classify breast lesions. The first scheme was developed using four steps namely, applying an adaptive multi-layer topographic region growing algorithm to segment lesions, computing initial radiomics features, applying a principal component algorithm to generate an optimal feature vector, and building a support vector machine classifier. The second CAD scheme was built based on a pre-trained residual net architecture (ResNet50) as a transfer learning model to classify breast lesions. Both CAD schemes were trained and tested using a 10-fold cross-validation method. Several score fusion methods were also investigated to classify breast lesions. CAD performances were evaluated and compared by the areas under the ROC curve (AUC). Results: The ResNet50 model-based CAD scheme yielded AUC = 0.85 ± 0.02, which was significantly higher than the radiomics feature-based CAD scheme with AUC = 0.77 ± 0.02 (p < 0.01). Additionally, the fusion of classification scores generated by the two CAD schemes did not further improve classification performance. Conclusion: This study demonstrates that using deep transfer learning is more efficient to develop CAD schemes and it enables a higher lesion classification performance than CAD schemes developed using radiomics-based technology.
format Online
Article
Text
id pubmed-9219621
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-92196212022-06-24 A Comparison of Computer-Aided Diagnosis Schemes Optimized Using Radiomics and Deep Transfer Learning Methods Danala, Gopichandh Maryada, Sai Kiran Islam, Warid Faiz, Rowzat Jones, Meredith Qiu, Yuchen Zheng, Bin Bioengineering (Basel) Article Objective: Radiomics and deep transfer learning are two popular technologies used to develop computer-aided detection and diagnosis (CAD) schemes of medical images. This study aims to investigate and to compare the advantages and the potential limitations of applying these two technologies in developing CAD schemes. Methods: A relatively large and diverse retrospective dataset including 3000 digital mammograms was assembled in which 1496 images depicted malignant lesions and 1504 images depicted benign lesions. Two CAD schemes were developed to classify breast lesions. The first scheme was developed using four steps namely, applying an adaptive multi-layer topographic region growing algorithm to segment lesions, computing initial radiomics features, applying a principal component algorithm to generate an optimal feature vector, and building a support vector machine classifier. The second CAD scheme was built based on a pre-trained residual net architecture (ResNet50) as a transfer learning model to classify breast lesions. Both CAD schemes were trained and tested using a 10-fold cross-validation method. Several score fusion methods were also investigated to classify breast lesions. CAD performances were evaluated and compared by the areas under the ROC curve (AUC). Results: The ResNet50 model-based CAD scheme yielded AUC = 0.85 ± 0.02, which was significantly higher than the radiomics feature-based CAD scheme with AUC = 0.77 ± 0.02 (p < 0.01). Additionally, the fusion of classification scores generated by the two CAD schemes did not further improve classification performance. Conclusion: This study demonstrates that using deep transfer learning is more efficient to develop CAD schemes and it enables a higher lesion classification performance than CAD schemes developed using radiomics-based technology. MDPI 2022-06-15 /pmc/articles/PMC9219621/ /pubmed/35735499 http://dx.doi.org/10.3390/bioengineering9060256 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Danala, Gopichandh
Maryada, Sai Kiran
Islam, Warid
Faiz, Rowzat
Jones, Meredith
Qiu, Yuchen
Zheng, Bin
A Comparison of Computer-Aided Diagnosis Schemes Optimized Using Radiomics and Deep Transfer Learning Methods
title A Comparison of Computer-Aided Diagnosis Schemes Optimized Using Radiomics and Deep Transfer Learning Methods
title_full A Comparison of Computer-Aided Diagnosis Schemes Optimized Using Radiomics and Deep Transfer Learning Methods
title_fullStr A Comparison of Computer-Aided Diagnosis Schemes Optimized Using Radiomics and Deep Transfer Learning Methods
title_full_unstemmed A Comparison of Computer-Aided Diagnosis Schemes Optimized Using Radiomics and Deep Transfer Learning Methods
title_short A Comparison of Computer-Aided Diagnosis Schemes Optimized Using Radiomics and Deep Transfer Learning Methods
title_sort comparison of computer-aided diagnosis schemes optimized using radiomics and deep transfer learning methods
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9219621/
https://www.ncbi.nlm.nih.gov/pubmed/35735499
http://dx.doi.org/10.3390/bioengineering9060256
work_keys_str_mv AT danalagopichandh acomparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT maryadasaikiran acomparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT islamwarid acomparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT faizrowzat acomparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT jonesmeredith acomparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT qiuyuchen acomparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT zhengbin acomparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT danalagopichandh comparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT maryadasaikiran comparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT islamwarid comparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT faizrowzat comparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT jonesmeredith comparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT qiuyuchen comparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods
AT zhengbin comparisonofcomputeraideddiagnosisschemesoptimizedusingradiomicsanddeeptransferlearningmethods