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Computational Detection of Extraprostatic Extension of Prostate Cancer on Multiparametric MRI Using Deep Learning

SIMPLE SUMMARY: In approximately 50% of prostate cancer patients undergoing surgical treatment, cancer has extended beyond the prostate boundary (i.e., extraprostatic extension). The aim of our study was to expand artificial intelligence (AI) models that identify cancer in the prostate to also ident...

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Autores principales: Moroianu, Ştefania L., Bhattacharya, Indrani, Seetharaman, Arun, Shao, Wei, Kunder, Christian A., Sharma, Avishkar, Ghanouni, Pejman, Fan, Richard E., Sonn, Geoffrey A., Rusu, Mirabela
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9220816/
https://www.ncbi.nlm.nih.gov/pubmed/35740487
http://dx.doi.org/10.3390/cancers14122821
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author Moroianu, Ştefania L.
Bhattacharya, Indrani
Seetharaman, Arun
Shao, Wei
Kunder, Christian A.
Sharma, Avishkar
Ghanouni, Pejman
Fan, Richard E.
Sonn, Geoffrey A.
Rusu, Mirabela
author_facet Moroianu, Ştefania L.
Bhattacharya, Indrani
Seetharaman, Arun
Shao, Wei
Kunder, Christian A.
Sharma, Avishkar
Ghanouni, Pejman
Fan, Richard E.
Sonn, Geoffrey A.
Rusu, Mirabela
author_sort Moroianu, Ştefania L.
collection PubMed
description SIMPLE SUMMARY: In approximately 50% of prostate cancer patients undergoing surgical treatment, cancer has extended beyond the prostate boundary (i.e., extraprostatic extension). The aim of our study was to expand artificial intelligence (AI) models that identify cancer in the prostate to also identify the cancer that spreads outside the boundary of the prostate. By combining past models with image post-processing steps and clinical decision rules, we built an autonomous approach to detect the extension of the cancer beyond the prostate boundary using prostate MRI. Our study included 123 prostate cancer patients (38 with extraprostatic extension), and our proposed method can detect cancer outside the prostate boundary in more cases than radiologists. ABSTRACT: The localization of extraprostatic extension (EPE), i.e., local spread of prostate cancer beyond the prostate capsular boundary, is important for risk stratification and surgical planning. However, the sensitivity of EPE detection by radiologists on MRI is low (57% on average). In this paper, we propose a method for computational detection of EPE on multiparametric MRI using deep learning. Ground truth labels of cancers and EPE were obtained in 123 patients (38 with EPE) by registering pre-surgical MRI with whole-mount digital histopathology images from radical prostatectomy. Our approach has two stages. First, we trained deep learning models using the MRI as input to generate cancer probability maps both inside and outside the prostate. Second, we built an image post-processing pipeline that generates predictions for EPE location based on the cancer probability maps and clinical knowledge. We used five-fold cross-validation to train our approach using data from 74 patients and tested it using data from an independent set of 49 patients. We compared two deep learning models for cancer detection: (i) UNet and (ii) the Correlated Signature Network for Indolent and Aggressive prostate cancer detection (CorrSigNIA). The best end-to-end model for EPE detection, which we call EPENet, was based on the CorrSigNIA cancer detection model. EPENet was successful at detecting cancers with extraprostatic extension, achieving a mean area under the receiver operator characteristic curve of [Formula: see text] at the patient-level. On the test set, EPENet had 80.0% sensitivity and 28.2% specificity at the patient-level compared to 50.0% sensitivity and 76.9% specificity for the radiologists. To account for spatial location of predictions during evaluation, we also computed results at the sextant-level, where the prostate was divided into sextants according to standard systematic 12-core biopsy procedure. At the sextant-level, EPENet achieved mean sensitivity 61.1% and mean specificity 58.3%. Our approach has the potential to provide the location of extraprostatic extension using MRI alone, thus serving as an independent diagnostic aid to radiologists and facilitating treatment planning.
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spelling pubmed-92208162022-06-24 Computational Detection of Extraprostatic Extension of Prostate Cancer on Multiparametric MRI Using Deep Learning Moroianu, Ştefania L. Bhattacharya, Indrani Seetharaman, Arun Shao, Wei Kunder, Christian A. Sharma, Avishkar Ghanouni, Pejman Fan, Richard E. Sonn, Geoffrey A. Rusu, Mirabela Cancers (Basel) Article SIMPLE SUMMARY: In approximately 50% of prostate cancer patients undergoing surgical treatment, cancer has extended beyond the prostate boundary (i.e., extraprostatic extension). The aim of our study was to expand artificial intelligence (AI) models that identify cancer in the prostate to also identify the cancer that spreads outside the boundary of the prostate. By combining past models with image post-processing steps and clinical decision rules, we built an autonomous approach to detect the extension of the cancer beyond the prostate boundary using prostate MRI. Our study included 123 prostate cancer patients (38 with extraprostatic extension), and our proposed method can detect cancer outside the prostate boundary in more cases than radiologists. ABSTRACT: The localization of extraprostatic extension (EPE), i.e., local spread of prostate cancer beyond the prostate capsular boundary, is important for risk stratification and surgical planning. However, the sensitivity of EPE detection by radiologists on MRI is low (57% on average). In this paper, we propose a method for computational detection of EPE on multiparametric MRI using deep learning. Ground truth labels of cancers and EPE were obtained in 123 patients (38 with EPE) by registering pre-surgical MRI with whole-mount digital histopathology images from radical prostatectomy. Our approach has two stages. First, we trained deep learning models using the MRI as input to generate cancer probability maps both inside and outside the prostate. Second, we built an image post-processing pipeline that generates predictions for EPE location based on the cancer probability maps and clinical knowledge. We used five-fold cross-validation to train our approach using data from 74 patients and tested it using data from an independent set of 49 patients. We compared two deep learning models for cancer detection: (i) UNet and (ii) the Correlated Signature Network for Indolent and Aggressive prostate cancer detection (CorrSigNIA). The best end-to-end model for EPE detection, which we call EPENet, was based on the CorrSigNIA cancer detection model. EPENet was successful at detecting cancers with extraprostatic extension, achieving a mean area under the receiver operator characteristic curve of [Formula: see text] at the patient-level. On the test set, EPENet had 80.0% sensitivity and 28.2% specificity at the patient-level compared to 50.0% sensitivity and 76.9% specificity for the radiologists. To account for spatial location of predictions during evaluation, we also computed results at the sextant-level, where the prostate was divided into sextants according to standard systematic 12-core biopsy procedure. At the sextant-level, EPENet achieved mean sensitivity 61.1% and mean specificity 58.3%. Our approach has the potential to provide the location of extraprostatic extension using MRI alone, thus serving as an independent diagnostic aid to radiologists and facilitating treatment planning. MDPI 2022-06-07 /pmc/articles/PMC9220816/ /pubmed/35740487 http://dx.doi.org/10.3390/cancers14122821 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Moroianu, Ştefania L.
Bhattacharya, Indrani
Seetharaman, Arun
Shao, Wei
Kunder, Christian A.
Sharma, Avishkar
Ghanouni, Pejman
Fan, Richard E.
Sonn, Geoffrey A.
Rusu, Mirabela
Computational Detection of Extraprostatic Extension of Prostate Cancer on Multiparametric MRI Using Deep Learning
title Computational Detection of Extraprostatic Extension of Prostate Cancer on Multiparametric MRI Using Deep Learning
title_full Computational Detection of Extraprostatic Extension of Prostate Cancer on Multiparametric MRI Using Deep Learning
title_fullStr Computational Detection of Extraprostatic Extension of Prostate Cancer on Multiparametric MRI Using Deep Learning
title_full_unstemmed Computational Detection of Extraprostatic Extension of Prostate Cancer on Multiparametric MRI Using Deep Learning
title_short Computational Detection of Extraprostatic Extension of Prostate Cancer on Multiparametric MRI Using Deep Learning
title_sort computational detection of extraprostatic extension of prostate cancer on multiparametric mri using deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9220816/
https://www.ncbi.nlm.nih.gov/pubmed/35740487
http://dx.doi.org/10.3390/cancers14122821
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