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Diversity of an uncommon elastic hypersaline microbial mat along a small-scale transect
We evaluated the microbial diversity and metabolome profile of an uncommon hypersaline elastic microbial mat from Cuatro Ciénegas Basin (CCB) in the Chihuahuan Desert of Coahuila, México. We collected ten samples on a small scale transect (1.5-m) and described its microbial diversity through NGS-bas...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9220918/ https://www.ncbi.nlm.nih.gov/pubmed/35757167 http://dx.doi.org/10.7717/peerj.13579 |
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author | Espinosa-Asuar, Laura Monroy-Guzmán, Camila Madrigal-Trejo, David Navarro-Miranda, Marisol Sánchez-Pérez, Jazmin Buenrostro Muñoz, Jhoselinne Villar, Juan Cifuentes Camargo, Julián Felipe Kalambokidis, Maria Esquivel-Hernandez, Diego A. Viladomat Jasso, Mariette Escalante, Ana E. Velez, Patricia Figueroa, Mario Martinez-Cardenas, Anahi Ramirez-Barahona, Santiago Gasca-Pineda, Jaime Eguiarte, Luis E. Souza, Valeria |
author_facet | Espinosa-Asuar, Laura Monroy-Guzmán, Camila Madrigal-Trejo, David Navarro-Miranda, Marisol Sánchez-Pérez, Jazmin Buenrostro Muñoz, Jhoselinne Villar, Juan Cifuentes Camargo, Julián Felipe Kalambokidis, Maria Esquivel-Hernandez, Diego A. Viladomat Jasso, Mariette Escalante, Ana E. Velez, Patricia Figueroa, Mario Martinez-Cardenas, Anahi Ramirez-Barahona, Santiago Gasca-Pineda, Jaime Eguiarte, Luis E. Souza, Valeria |
author_sort | Espinosa-Asuar, Laura |
collection | PubMed |
description | We evaluated the microbial diversity and metabolome profile of an uncommon hypersaline elastic microbial mat from Cuatro Ciénegas Basin (CCB) in the Chihuahuan Desert of Coahuila, México. We collected ten samples on a small scale transect (1.5-m) and described its microbial diversity through NGS-based ITS and 16S rDNA gene sequencing. A very low number of taxa comprised a considerable proportion of the mat and were shared across all sampling points, whereas the rare biosphere was more phylogenetically diverse (Faith’s Phylogenetic Diversity (FPD) index) and phylogenetically disperse (using a null model distribution of Phylogenetic Species Clustering (nmdPSC)) than the abundant (high read count) taxa for both analyzed libraries. We also found a distinctive metabolome profile for each sample and were able to tentatively annotate several classes of compounds with relevant biological properties. |
format | Online Article Text |
id | pubmed-9220918 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92209182022-06-24 Diversity of an uncommon elastic hypersaline microbial mat along a small-scale transect Espinosa-Asuar, Laura Monroy-Guzmán, Camila Madrigal-Trejo, David Navarro-Miranda, Marisol Sánchez-Pérez, Jazmin Buenrostro Muñoz, Jhoselinne Villar, Juan Cifuentes Camargo, Julián Felipe Kalambokidis, Maria Esquivel-Hernandez, Diego A. Viladomat Jasso, Mariette Escalante, Ana E. Velez, Patricia Figueroa, Mario Martinez-Cardenas, Anahi Ramirez-Barahona, Santiago Gasca-Pineda, Jaime Eguiarte, Luis E. Souza, Valeria PeerJ Biodiversity We evaluated the microbial diversity and metabolome profile of an uncommon hypersaline elastic microbial mat from Cuatro Ciénegas Basin (CCB) in the Chihuahuan Desert of Coahuila, México. We collected ten samples on a small scale transect (1.5-m) and described its microbial diversity through NGS-based ITS and 16S rDNA gene sequencing. A very low number of taxa comprised a considerable proportion of the mat and were shared across all sampling points, whereas the rare biosphere was more phylogenetically diverse (Faith’s Phylogenetic Diversity (FPD) index) and phylogenetically disperse (using a null model distribution of Phylogenetic Species Clustering (nmdPSC)) than the abundant (high read count) taxa for both analyzed libraries. We also found a distinctive metabolome profile for each sample and were able to tentatively annotate several classes of compounds with relevant biological properties. PeerJ Inc. 2022-06-20 /pmc/articles/PMC9220918/ /pubmed/35757167 http://dx.doi.org/10.7717/peerj.13579 Text en © 2022 Espinosa-Asuar et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Biodiversity Espinosa-Asuar, Laura Monroy-Guzmán, Camila Madrigal-Trejo, David Navarro-Miranda, Marisol Sánchez-Pérez, Jazmin Buenrostro Muñoz, Jhoselinne Villar, Juan Cifuentes Camargo, Julián Felipe Kalambokidis, Maria Esquivel-Hernandez, Diego A. Viladomat Jasso, Mariette Escalante, Ana E. Velez, Patricia Figueroa, Mario Martinez-Cardenas, Anahi Ramirez-Barahona, Santiago Gasca-Pineda, Jaime Eguiarte, Luis E. Souza, Valeria Diversity of an uncommon elastic hypersaline microbial mat along a small-scale transect |
title | Diversity of an uncommon elastic hypersaline microbial mat along a small-scale transect |
title_full | Diversity of an uncommon elastic hypersaline microbial mat along a small-scale transect |
title_fullStr | Diversity of an uncommon elastic hypersaline microbial mat along a small-scale transect |
title_full_unstemmed | Diversity of an uncommon elastic hypersaline microbial mat along a small-scale transect |
title_short | Diversity of an uncommon elastic hypersaline microbial mat along a small-scale transect |
title_sort | diversity of an uncommon elastic hypersaline microbial mat along a small-scale transect |
topic | Biodiversity |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9220918/ https://www.ncbi.nlm.nih.gov/pubmed/35757167 http://dx.doi.org/10.7717/peerj.13579 |
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