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RP-Rs-fMRIomics as a Novel Imaging Analysis Strategy to Empower Diagnosis of Brain Gliomas

SIMPLE SUMMARY: Resting-state functional magnetic resonance imaging (rs-fMRI), a popular neuroimaging technique, can provide rich information about functional processes in the brain with a large array of imaging parameters and is suitable for exploring the pathophysiological essence of gliomas. In t...

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Autores principales: Liu, Xiaoxue, Li, Jianrui, Xu, Qiang, Zhang, Qirui, Zhou, Xian, Pan, Hao, Wu, Nan, Lu, Guangming, Zhang, Zhiqiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9220978/
https://www.ncbi.nlm.nih.gov/pubmed/35740484
http://dx.doi.org/10.3390/cancers14122818
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author Liu, Xiaoxue
Li, Jianrui
Xu, Qiang
Zhang, Qirui
Zhou, Xian
Pan, Hao
Wu, Nan
Lu, Guangming
Zhang, Zhiqiang
author_facet Liu, Xiaoxue
Li, Jianrui
Xu, Qiang
Zhang, Qirui
Zhou, Xian
Pan, Hao
Wu, Nan
Lu, Guangming
Zhang, Zhiqiang
author_sort Liu, Xiaoxue
collection PubMed
description SIMPLE SUMMARY: Resting-state functional magnetic resonance imaging (rs-fMRI), a popular neuroimaging technique, can provide rich information about functional processes in the brain with a large array of imaging parameters and is suitable for exploring the pathophysiological essence of gliomas. In this study, by applying omics analysis strategy to rs-fMRI with exhaustive regional parameters, we proposed a novel approach, named Regional Parameter of Resting-state fMRI-omics (RP-Rs-fMRIomics), and further evaluated the diagnosis performance of the method on brain gliomas. We found that the RP-Rs-fMRIomics, featuring entire investigation and high interpretability, presented superior performance in prediction of tumor grade, IDH genotype and prognosis of brain gliomas. This RP-Rs-fMRIomics not only contributed a new imaging method for brain glioma research, but also expanded the clinical application of rs-fMRI. ABSTRACT: Rs-fMRI can provide rich information about functional processes in the brain with a large array of imaging parameters and is also suitable for investigating the biological processes in cerebral gliomas. We aimed to propose an imaging analysis method of RP-Rs-fMRIomics by adopting omics analysis on rs-fMRI with exhaustive regional parameters and subsequently estimating its feasibility on the prediction diagnosis of gliomas. In this retrospective study, preoperative rs-fMRI data were acquired from patients confirmed with diffuse gliomas (n = 176). A total of 420 features were extracted through measuring 14 regional parameters of rs-fMRI as much as available currently in 10 specific narrow frequency bins and three parts of gliomas. With a randomly split training and testing dataset (ratio 7:3), four classifiers were implemented to construct and optimize RP-Rs-fMRIomics models for predicting glioma grade, IDH status and Karnofsky Performance Status scores. The RP-Rs-fMRIomics models (AUROC 0.988, 0.905, 0.801) were superior to the corresponding traditional single rs-fMRI index (AUROC 0.803, 0.731, 0.632) in predicting glioma grade, IDH and survival. The RP-Rs-fMRIomics analysis, featuring high interpretability, was competitive for prediction of glioma grading, IDH genotype and prognosis. The method expanded the clinical application of rs-fMRI and also contributed a new imaging analysis for brain tumor research.
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spelling pubmed-92209782022-06-24 RP-Rs-fMRIomics as a Novel Imaging Analysis Strategy to Empower Diagnosis of Brain Gliomas Liu, Xiaoxue Li, Jianrui Xu, Qiang Zhang, Qirui Zhou, Xian Pan, Hao Wu, Nan Lu, Guangming Zhang, Zhiqiang Cancers (Basel) Article SIMPLE SUMMARY: Resting-state functional magnetic resonance imaging (rs-fMRI), a popular neuroimaging technique, can provide rich information about functional processes in the brain with a large array of imaging parameters and is suitable for exploring the pathophysiological essence of gliomas. In this study, by applying omics analysis strategy to rs-fMRI with exhaustive regional parameters, we proposed a novel approach, named Regional Parameter of Resting-state fMRI-omics (RP-Rs-fMRIomics), and further evaluated the diagnosis performance of the method on brain gliomas. We found that the RP-Rs-fMRIomics, featuring entire investigation and high interpretability, presented superior performance in prediction of tumor grade, IDH genotype and prognosis of brain gliomas. This RP-Rs-fMRIomics not only contributed a new imaging method for brain glioma research, but also expanded the clinical application of rs-fMRI. ABSTRACT: Rs-fMRI can provide rich information about functional processes in the brain with a large array of imaging parameters and is also suitable for investigating the biological processes in cerebral gliomas. We aimed to propose an imaging analysis method of RP-Rs-fMRIomics by adopting omics analysis on rs-fMRI with exhaustive regional parameters and subsequently estimating its feasibility on the prediction diagnosis of gliomas. In this retrospective study, preoperative rs-fMRI data were acquired from patients confirmed with diffuse gliomas (n = 176). A total of 420 features were extracted through measuring 14 regional parameters of rs-fMRI as much as available currently in 10 specific narrow frequency bins and three parts of gliomas. With a randomly split training and testing dataset (ratio 7:3), four classifiers were implemented to construct and optimize RP-Rs-fMRIomics models for predicting glioma grade, IDH status and Karnofsky Performance Status scores. The RP-Rs-fMRIomics models (AUROC 0.988, 0.905, 0.801) were superior to the corresponding traditional single rs-fMRI index (AUROC 0.803, 0.731, 0.632) in predicting glioma grade, IDH and survival. The RP-Rs-fMRIomics analysis, featuring high interpretability, was competitive for prediction of glioma grading, IDH genotype and prognosis. The method expanded the clinical application of rs-fMRI and also contributed a new imaging analysis for brain tumor research. MDPI 2022-06-07 /pmc/articles/PMC9220978/ /pubmed/35740484 http://dx.doi.org/10.3390/cancers14122818 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Xiaoxue
Li, Jianrui
Xu, Qiang
Zhang, Qirui
Zhou, Xian
Pan, Hao
Wu, Nan
Lu, Guangming
Zhang, Zhiqiang
RP-Rs-fMRIomics as a Novel Imaging Analysis Strategy to Empower Diagnosis of Brain Gliomas
title RP-Rs-fMRIomics as a Novel Imaging Analysis Strategy to Empower Diagnosis of Brain Gliomas
title_full RP-Rs-fMRIomics as a Novel Imaging Analysis Strategy to Empower Diagnosis of Brain Gliomas
title_fullStr RP-Rs-fMRIomics as a Novel Imaging Analysis Strategy to Empower Diagnosis of Brain Gliomas
title_full_unstemmed RP-Rs-fMRIomics as a Novel Imaging Analysis Strategy to Empower Diagnosis of Brain Gliomas
title_short RP-Rs-fMRIomics as a Novel Imaging Analysis Strategy to Empower Diagnosis of Brain Gliomas
title_sort rp-rs-fmriomics as a novel imaging analysis strategy to empower diagnosis of brain gliomas
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9220978/
https://www.ncbi.nlm.nih.gov/pubmed/35740484
http://dx.doi.org/10.3390/cancers14122818
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