Cargando…

New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease

The objective was to study the genetic etiology of Ménière’s disease (MD) using next-generation sequencing in three families with three cases of MD. Whole exome sequencing was used to identify rare genetic variants co-segregating with MD in Finnish families. In silico estimations and population data...

Descripción completa

Detalles Bibliográficos
Autores principales: Skarp, Sini, Korvala, Johanna, Kotimäki, Jouko, Sorri, Martti, Männikkö, Minna, Hietikko, Elina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9222295/
https://www.ncbi.nlm.nih.gov/pubmed/35741759
http://dx.doi.org/10.3390/genes13060998
_version_ 1784732838865666048
author Skarp, Sini
Korvala, Johanna
Kotimäki, Jouko
Sorri, Martti
Männikkö, Minna
Hietikko, Elina
author_facet Skarp, Sini
Korvala, Johanna
Kotimäki, Jouko
Sorri, Martti
Männikkö, Minna
Hietikko, Elina
author_sort Skarp, Sini
collection PubMed
description The objective was to study the genetic etiology of Ménière’s disease (MD) using next-generation sequencing in three families with three cases of MD. Whole exome sequencing was used to identify rare genetic variants co-segregating with MD in Finnish families. In silico estimations and population databases were used to estimate the frequency and pathogenicity of the variants. Variants were validated and genotyped from additional family members using capillary sequencing. A geneMANIA analysis was conducted to investigate the functional pathways and protein interactions of candidate genes. Seven rare variants were identified to co-segregate with MD in the three families: one variant in the CYP2B6 gene in family I, one variant in GUSB and EPB42 in family II, and one variant in each of the SLC6A, ASPM, KNTC1, and OVCH1 genes in family III. Four of these genes were linked to the same co-expression network with previous familial MD candidate genes. Dysfunction of CYP2B6 and SLC6A could predispose to MD via the oxidative stress pathway. Identification of ASPM and KNTC1 as candidate genes for MD suggests dysregulation of mitotic spindle formation in familial MD. The genetic etiology of familial MD is heterogenic. Our findings suggest a role for genes acting on oxidative stress and mitotic spindle formation in MD but also highlight the genetic complexity of MD.
format Online
Article
Text
id pubmed-9222295
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-92222952022-06-24 New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease Skarp, Sini Korvala, Johanna Kotimäki, Jouko Sorri, Martti Männikkö, Minna Hietikko, Elina Genes (Basel) Article The objective was to study the genetic etiology of Ménière’s disease (MD) using next-generation sequencing in three families with three cases of MD. Whole exome sequencing was used to identify rare genetic variants co-segregating with MD in Finnish families. In silico estimations and population databases were used to estimate the frequency and pathogenicity of the variants. Variants were validated and genotyped from additional family members using capillary sequencing. A geneMANIA analysis was conducted to investigate the functional pathways and protein interactions of candidate genes. Seven rare variants were identified to co-segregate with MD in the three families: one variant in the CYP2B6 gene in family I, one variant in GUSB and EPB42 in family II, and one variant in each of the SLC6A, ASPM, KNTC1, and OVCH1 genes in family III. Four of these genes were linked to the same co-expression network with previous familial MD candidate genes. Dysfunction of CYP2B6 and SLC6A could predispose to MD via the oxidative stress pathway. Identification of ASPM and KNTC1 as candidate genes for MD suggests dysregulation of mitotic spindle formation in familial MD. The genetic etiology of familial MD is heterogenic. Our findings suggest a role for genes acting on oxidative stress and mitotic spindle formation in MD but also highlight the genetic complexity of MD. MDPI 2022-06-01 /pmc/articles/PMC9222295/ /pubmed/35741759 http://dx.doi.org/10.3390/genes13060998 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Skarp, Sini
Korvala, Johanna
Kotimäki, Jouko
Sorri, Martti
Männikkö, Minna
Hietikko, Elina
New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease
title New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease
title_full New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease
title_fullStr New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease
title_full_unstemmed New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease
title_short New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease
title_sort new genetic variants in cyp2b6 and slc6a support the role of oxidative stress in familial ménière’s disease
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9222295/
https://www.ncbi.nlm.nih.gov/pubmed/35741759
http://dx.doi.org/10.3390/genes13060998
work_keys_str_mv AT skarpsini newgeneticvariantsincyp2b6andslc6asupporttheroleofoxidativestressinfamilialmenieresdisease
AT korvalajohanna newgeneticvariantsincyp2b6andslc6asupporttheroleofoxidativestressinfamilialmenieresdisease
AT kotimakijouko newgeneticvariantsincyp2b6andslc6asupporttheroleofoxidativestressinfamilialmenieresdisease
AT sorrimartti newgeneticvariantsincyp2b6andslc6asupporttheroleofoxidativestressinfamilialmenieresdisease
AT mannikkominna newgeneticvariantsincyp2b6andslc6asupporttheroleofoxidativestressinfamilialmenieresdisease
AT hietikkoelina newgeneticvariantsincyp2b6andslc6asupporttheroleofoxidativestressinfamilialmenieresdisease