Cargando…
New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease
The objective was to study the genetic etiology of Ménière’s disease (MD) using next-generation sequencing in three families with three cases of MD. Whole exome sequencing was used to identify rare genetic variants co-segregating with MD in Finnish families. In silico estimations and population data...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9222295/ https://www.ncbi.nlm.nih.gov/pubmed/35741759 http://dx.doi.org/10.3390/genes13060998 |
_version_ | 1784732838865666048 |
---|---|
author | Skarp, Sini Korvala, Johanna Kotimäki, Jouko Sorri, Martti Männikkö, Minna Hietikko, Elina |
author_facet | Skarp, Sini Korvala, Johanna Kotimäki, Jouko Sorri, Martti Männikkö, Minna Hietikko, Elina |
author_sort | Skarp, Sini |
collection | PubMed |
description | The objective was to study the genetic etiology of Ménière’s disease (MD) using next-generation sequencing in three families with three cases of MD. Whole exome sequencing was used to identify rare genetic variants co-segregating with MD in Finnish families. In silico estimations and population databases were used to estimate the frequency and pathogenicity of the variants. Variants were validated and genotyped from additional family members using capillary sequencing. A geneMANIA analysis was conducted to investigate the functional pathways and protein interactions of candidate genes. Seven rare variants were identified to co-segregate with MD in the three families: one variant in the CYP2B6 gene in family I, one variant in GUSB and EPB42 in family II, and one variant in each of the SLC6A, ASPM, KNTC1, and OVCH1 genes in family III. Four of these genes were linked to the same co-expression network with previous familial MD candidate genes. Dysfunction of CYP2B6 and SLC6A could predispose to MD via the oxidative stress pathway. Identification of ASPM and KNTC1 as candidate genes for MD suggests dysregulation of mitotic spindle formation in familial MD. The genetic etiology of familial MD is heterogenic. Our findings suggest a role for genes acting on oxidative stress and mitotic spindle formation in MD but also highlight the genetic complexity of MD. |
format | Online Article Text |
id | pubmed-9222295 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-92222952022-06-24 New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease Skarp, Sini Korvala, Johanna Kotimäki, Jouko Sorri, Martti Männikkö, Minna Hietikko, Elina Genes (Basel) Article The objective was to study the genetic etiology of Ménière’s disease (MD) using next-generation sequencing in three families with three cases of MD. Whole exome sequencing was used to identify rare genetic variants co-segregating with MD in Finnish families. In silico estimations and population databases were used to estimate the frequency and pathogenicity of the variants. Variants were validated and genotyped from additional family members using capillary sequencing. A geneMANIA analysis was conducted to investigate the functional pathways and protein interactions of candidate genes. Seven rare variants were identified to co-segregate with MD in the three families: one variant in the CYP2B6 gene in family I, one variant in GUSB and EPB42 in family II, and one variant in each of the SLC6A, ASPM, KNTC1, and OVCH1 genes in family III. Four of these genes were linked to the same co-expression network with previous familial MD candidate genes. Dysfunction of CYP2B6 and SLC6A could predispose to MD via the oxidative stress pathway. Identification of ASPM and KNTC1 as candidate genes for MD suggests dysregulation of mitotic spindle formation in familial MD. The genetic etiology of familial MD is heterogenic. Our findings suggest a role for genes acting on oxidative stress and mitotic spindle formation in MD but also highlight the genetic complexity of MD. MDPI 2022-06-01 /pmc/articles/PMC9222295/ /pubmed/35741759 http://dx.doi.org/10.3390/genes13060998 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Skarp, Sini Korvala, Johanna Kotimäki, Jouko Sorri, Martti Männikkö, Minna Hietikko, Elina New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease |
title | New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease |
title_full | New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease |
title_fullStr | New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease |
title_full_unstemmed | New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease |
title_short | New Genetic Variants in CYP2B6 and SLC6A Support the Role of Oxidative Stress in Familial Ménière’s Disease |
title_sort | new genetic variants in cyp2b6 and slc6a support the role of oxidative stress in familial ménière’s disease |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9222295/ https://www.ncbi.nlm.nih.gov/pubmed/35741759 http://dx.doi.org/10.3390/genes13060998 |
work_keys_str_mv | AT skarpsini newgeneticvariantsincyp2b6andslc6asupporttheroleofoxidativestressinfamilialmenieresdisease AT korvalajohanna newgeneticvariantsincyp2b6andslc6asupporttheroleofoxidativestressinfamilialmenieresdisease AT kotimakijouko newgeneticvariantsincyp2b6andslc6asupporttheroleofoxidativestressinfamilialmenieresdisease AT sorrimartti newgeneticvariantsincyp2b6andslc6asupporttheroleofoxidativestressinfamilialmenieresdisease AT mannikkominna newgeneticvariantsincyp2b6andslc6asupporttheroleofoxidativestressinfamilialmenieresdisease AT hietikkoelina newgeneticvariantsincyp2b6andslc6asupporttheroleofoxidativestressinfamilialmenieresdisease |