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Exploring the Core Genes of Schizophrenia Based on Bioinformatics Analysis

Schizophrenia is a clinical syndrome composed of a group of symptoms involving many obstacles such as perception, thinking, emotion, behavior, and the disharmony of mental activities. Schizophrenia is one of the top ten causes of disability globally, accounting for about 1% of the global population....

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Autores principales: Feng, Shunkang, Sun, Ping, Qu, Chunhui, Wu, Xiaohui, Yang, Lu, Yang, Tao, Wang, Shuo, Fang, Yiru, Chen, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9223283/
https://www.ncbi.nlm.nih.gov/pubmed/35741729
http://dx.doi.org/10.3390/genes13060967
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author Feng, Shunkang
Sun, Ping
Qu, Chunhui
Wu, Xiaohui
Yang, Lu
Yang, Tao
Wang, Shuo
Fang, Yiru
Chen, Jun
author_facet Feng, Shunkang
Sun, Ping
Qu, Chunhui
Wu, Xiaohui
Yang, Lu
Yang, Tao
Wang, Shuo
Fang, Yiru
Chen, Jun
author_sort Feng, Shunkang
collection PubMed
description Schizophrenia is a clinical syndrome composed of a group of symptoms involving many obstacles such as perception, thinking, emotion, behavior, and the disharmony of mental activities. Schizophrenia is one of the top ten causes of disability globally, accounting for about 1% of the global population. Previous studies have shown that schizophrenia has solid genetic characteristics. However, the diagnosis of schizophrenia mainly depends on symptomatic manifestations, and no gene can be used as a clear diagnostic marker at present. This study explored the hub genes of schizophrenia by bioinformatics analysis. Three datasets were selected and downloaded from the GEO database (GSE53987, GSE21138, and GSE27383). GEO2R, NCBI’s online analysis tool, is used to screen out significant gene expression differences. The genes were functionally enriched by GO and KEGG enrichment analysis. On this basis, the hub genes were explored through Cytoscape software, and the immune infiltration analysis and diagnostic value of the screened hub genes were judged. Finally, four hub genes (NFKBIA, CDKN1A, BTG2, GADD45B) were screened. There was a significant correlation between two hub genes (NFKBIA, BTG2) and resting memory CD4 T cells. The ROC curve results showed that all four hub genes had diagnostic value.
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spelling pubmed-92232832022-06-24 Exploring the Core Genes of Schizophrenia Based on Bioinformatics Analysis Feng, Shunkang Sun, Ping Qu, Chunhui Wu, Xiaohui Yang, Lu Yang, Tao Wang, Shuo Fang, Yiru Chen, Jun Genes (Basel) Article Schizophrenia is a clinical syndrome composed of a group of symptoms involving many obstacles such as perception, thinking, emotion, behavior, and the disharmony of mental activities. Schizophrenia is one of the top ten causes of disability globally, accounting for about 1% of the global population. Previous studies have shown that schizophrenia has solid genetic characteristics. However, the diagnosis of schizophrenia mainly depends on symptomatic manifestations, and no gene can be used as a clear diagnostic marker at present. This study explored the hub genes of schizophrenia by bioinformatics analysis. Three datasets were selected and downloaded from the GEO database (GSE53987, GSE21138, and GSE27383). GEO2R, NCBI’s online analysis tool, is used to screen out significant gene expression differences. The genes were functionally enriched by GO and KEGG enrichment analysis. On this basis, the hub genes were explored through Cytoscape software, and the immune infiltration analysis and diagnostic value of the screened hub genes were judged. Finally, four hub genes (NFKBIA, CDKN1A, BTG2, GADD45B) were screened. There was a significant correlation between two hub genes (NFKBIA, BTG2) and resting memory CD4 T cells. The ROC curve results showed that all four hub genes had diagnostic value. MDPI 2022-05-27 /pmc/articles/PMC9223283/ /pubmed/35741729 http://dx.doi.org/10.3390/genes13060967 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Feng, Shunkang
Sun, Ping
Qu, Chunhui
Wu, Xiaohui
Yang, Lu
Yang, Tao
Wang, Shuo
Fang, Yiru
Chen, Jun
Exploring the Core Genes of Schizophrenia Based on Bioinformatics Analysis
title Exploring the Core Genes of Schizophrenia Based on Bioinformatics Analysis
title_full Exploring the Core Genes of Schizophrenia Based on Bioinformatics Analysis
title_fullStr Exploring the Core Genes of Schizophrenia Based on Bioinformatics Analysis
title_full_unstemmed Exploring the Core Genes of Schizophrenia Based on Bioinformatics Analysis
title_short Exploring the Core Genes of Schizophrenia Based on Bioinformatics Analysis
title_sort exploring the core genes of schizophrenia based on bioinformatics analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9223283/
https://www.ncbi.nlm.nih.gov/pubmed/35741729
http://dx.doi.org/10.3390/genes13060967
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