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Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets
Mathematical modeling of signaling pathways and regulatory networks has been supporting experimental research for some time now. Sensitivity analysis, aimed at finding model parameters whose changes yield significantly altered cellular responses, is an important part of modeling work. However, sensi...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9223434/ https://www.ncbi.nlm.nih.gov/pubmed/35743048 http://dx.doi.org/10.3390/ijms23126604 |
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author | Kardynska, Malgorzata Smieja, Jaroslaw Paszek, Pawel Puszynski, Krzysztof |
author_facet | Kardynska, Malgorzata Smieja, Jaroslaw Paszek, Pawel Puszynski, Krzysztof |
author_sort | Kardynska, Malgorzata |
collection | PubMed |
description | Mathematical modeling of signaling pathways and regulatory networks has been supporting experimental research for some time now. Sensitivity analysis, aimed at finding model parameters whose changes yield significantly altered cellular responses, is an important part of modeling work. However, sensitivity methods are often directly transplanted from analysis of technical systems, and thus, they may not serve the purposes of analysis of biological systems. This paper presents a novel sensitivity analysis method that is particularly suited to the task of searching for potential molecular drug targets in signaling pathways. Using two sample models of pathways, p53/Mdm2 regulatory module and IFN- [Formula: see text]-induced JAK/STAT signaling pathway, we show that the method leads to biologically relevant conclusions, identifying processes suitable for targeted pharmacological inhibition, represented by the reduction of kinetic parameter values. That, in turn, facilitates subsequent search for active drug components. |
format | Online Article Text |
id | pubmed-9223434 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-92234342022-06-24 Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets Kardynska, Malgorzata Smieja, Jaroslaw Paszek, Pawel Puszynski, Krzysztof Int J Mol Sci Article Mathematical modeling of signaling pathways and regulatory networks has been supporting experimental research for some time now. Sensitivity analysis, aimed at finding model parameters whose changes yield significantly altered cellular responses, is an important part of modeling work. However, sensitivity methods are often directly transplanted from analysis of technical systems, and thus, they may not serve the purposes of analysis of biological systems. This paper presents a novel sensitivity analysis method that is particularly suited to the task of searching for potential molecular drug targets in signaling pathways. Using two sample models of pathways, p53/Mdm2 regulatory module and IFN- [Formula: see text]-induced JAK/STAT signaling pathway, we show that the method leads to biologically relevant conclusions, identifying processes suitable for targeted pharmacological inhibition, represented by the reduction of kinetic parameter values. That, in turn, facilitates subsequent search for active drug components. MDPI 2022-06-13 /pmc/articles/PMC9223434/ /pubmed/35743048 http://dx.doi.org/10.3390/ijms23126604 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kardynska, Malgorzata Smieja, Jaroslaw Paszek, Pawel Puszynski, Krzysztof Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets |
title | Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets |
title_full | Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets |
title_fullStr | Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets |
title_full_unstemmed | Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets |
title_short | Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets |
title_sort | application of sensitivity analysis to discover potential molecular drug targets |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9223434/ https://www.ncbi.nlm.nih.gov/pubmed/35743048 http://dx.doi.org/10.3390/ijms23126604 |
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