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Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets

Mathematical modeling of signaling pathways and regulatory networks has been supporting experimental research for some time now. Sensitivity analysis, aimed at finding model parameters whose changes yield significantly altered cellular responses, is an important part of modeling work. However, sensi...

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Detalles Bibliográficos
Autores principales: Kardynska, Malgorzata, Smieja, Jaroslaw, Paszek, Pawel, Puszynski, Krzysztof
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9223434/
https://www.ncbi.nlm.nih.gov/pubmed/35743048
http://dx.doi.org/10.3390/ijms23126604
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author Kardynska, Malgorzata
Smieja, Jaroslaw
Paszek, Pawel
Puszynski, Krzysztof
author_facet Kardynska, Malgorzata
Smieja, Jaroslaw
Paszek, Pawel
Puszynski, Krzysztof
author_sort Kardynska, Malgorzata
collection PubMed
description Mathematical modeling of signaling pathways and regulatory networks has been supporting experimental research for some time now. Sensitivity analysis, aimed at finding model parameters whose changes yield significantly altered cellular responses, is an important part of modeling work. However, sensitivity methods are often directly transplanted from analysis of technical systems, and thus, they may not serve the purposes of analysis of biological systems. This paper presents a novel sensitivity analysis method that is particularly suited to the task of searching for potential molecular drug targets in signaling pathways. Using two sample models of pathways, p53/Mdm2 regulatory module and IFN- [Formula: see text]-induced JAK/STAT signaling pathway, we show that the method leads to biologically relevant conclusions, identifying processes suitable for targeted pharmacological inhibition, represented by the reduction of kinetic parameter values. That, in turn, facilitates subsequent search for active drug components.
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spelling pubmed-92234342022-06-24 Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets Kardynska, Malgorzata Smieja, Jaroslaw Paszek, Pawel Puszynski, Krzysztof Int J Mol Sci Article Mathematical modeling of signaling pathways and regulatory networks has been supporting experimental research for some time now. Sensitivity analysis, aimed at finding model parameters whose changes yield significantly altered cellular responses, is an important part of modeling work. However, sensitivity methods are often directly transplanted from analysis of technical systems, and thus, they may not serve the purposes of analysis of biological systems. This paper presents a novel sensitivity analysis method that is particularly suited to the task of searching for potential molecular drug targets in signaling pathways. Using two sample models of pathways, p53/Mdm2 regulatory module and IFN- [Formula: see text]-induced JAK/STAT signaling pathway, we show that the method leads to biologically relevant conclusions, identifying processes suitable for targeted pharmacological inhibition, represented by the reduction of kinetic parameter values. That, in turn, facilitates subsequent search for active drug components. MDPI 2022-06-13 /pmc/articles/PMC9223434/ /pubmed/35743048 http://dx.doi.org/10.3390/ijms23126604 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kardynska, Malgorzata
Smieja, Jaroslaw
Paszek, Pawel
Puszynski, Krzysztof
Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets
title Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets
title_full Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets
title_fullStr Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets
title_full_unstemmed Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets
title_short Application of Sensitivity Analysis to Discover Potential Molecular Drug Targets
title_sort application of sensitivity analysis to discover potential molecular drug targets
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9223434/
https://www.ncbi.nlm.nih.gov/pubmed/35743048
http://dx.doi.org/10.3390/ijms23126604
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