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miRNA Regulatory Networks Associated with Peripheral Vascular Diseases
A growing body of evidence indicates a crucial role of miRNA regulatory function in a variety of mechanisms that contribute to the development of diseases. In our previous work, alterations in miRNA expression levels and targeted genes were shown in peripheral blood mononuclear cells (PBMCs) from pa...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9224609/ https://www.ncbi.nlm.nih.gov/pubmed/35743538 http://dx.doi.org/10.3390/jcm11123470 |
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author | Zalewski, Daniel P. Ruszel, Karol P. Stępniewski, Andrzej Gałkowski, Dariusz Feldo, Marcin Kocki, Janusz Bogucka-Kocka, Anna |
author_facet | Zalewski, Daniel P. Ruszel, Karol P. Stępniewski, Andrzej Gałkowski, Dariusz Feldo, Marcin Kocki, Janusz Bogucka-Kocka, Anna |
author_sort | Zalewski, Daniel P. |
collection | PubMed |
description | A growing body of evidence indicates a crucial role of miRNA regulatory function in a variety of mechanisms that contribute to the development of diseases. In our previous work, alterations in miRNA expression levels and targeted genes were shown in peripheral blood mononuclear cells (PBMCs) from patients with lower extremity artery disease (LEAD), abdominal aortic aneurysm (AAA), and chronic venous disease (CVD) in comparison with healthy controls. In this paper, previously obtained miRNA expression profiles were compared between the LEAD, AAA, and CVD groups to find either similarities or differences within the studied diseases. Differentially expressed miRNAs were identified using the DESeq2 method implemented in the R programming software. Pairwise comparisons (LEAD vs. AAA, LEAD vs. CVD, and AAA vs. CVD) were performed and revealed 10, 8, and 17 differentially expressed miRNA transcripts, respectively. The functional analysis of the obtained miRNAs was conducted using the miRNet 2.0 online tool and disclosed associations with inflammation and cellular differentiation, motility, and death. The miRNet 2.0 tool was also used to identify regulatory interactions between dysregulated miRNAs and target genes in patients with LEAD, AAA, and CVD. The presented research provides new information about similarities and differences in the miRNA-dependent regulatory mechanisms involved in the pathogenesis of LEAD, AAA, and CVD. |
format | Online Article Text |
id | pubmed-9224609 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-92246092022-06-24 miRNA Regulatory Networks Associated with Peripheral Vascular Diseases Zalewski, Daniel P. Ruszel, Karol P. Stępniewski, Andrzej Gałkowski, Dariusz Feldo, Marcin Kocki, Janusz Bogucka-Kocka, Anna J Clin Med Article A growing body of evidence indicates a crucial role of miRNA regulatory function in a variety of mechanisms that contribute to the development of diseases. In our previous work, alterations in miRNA expression levels and targeted genes were shown in peripheral blood mononuclear cells (PBMCs) from patients with lower extremity artery disease (LEAD), abdominal aortic aneurysm (AAA), and chronic venous disease (CVD) in comparison with healthy controls. In this paper, previously obtained miRNA expression profiles were compared between the LEAD, AAA, and CVD groups to find either similarities or differences within the studied diseases. Differentially expressed miRNAs were identified using the DESeq2 method implemented in the R programming software. Pairwise comparisons (LEAD vs. AAA, LEAD vs. CVD, and AAA vs. CVD) were performed and revealed 10, 8, and 17 differentially expressed miRNA transcripts, respectively. The functional analysis of the obtained miRNAs was conducted using the miRNet 2.0 online tool and disclosed associations with inflammation and cellular differentiation, motility, and death. The miRNet 2.0 tool was also used to identify regulatory interactions between dysregulated miRNAs and target genes in patients with LEAD, AAA, and CVD. The presented research provides new information about similarities and differences in the miRNA-dependent regulatory mechanisms involved in the pathogenesis of LEAD, AAA, and CVD. MDPI 2022-06-16 /pmc/articles/PMC9224609/ /pubmed/35743538 http://dx.doi.org/10.3390/jcm11123470 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zalewski, Daniel P. Ruszel, Karol P. Stępniewski, Andrzej Gałkowski, Dariusz Feldo, Marcin Kocki, Janusz Bogucka-Kocka, Anna miRNA Regulatory Networks Associated with Peripheral Vascular Diseases |
title | miRNA Regulatory Networks Associated with Peripheral Vascular Diseases |
title_full | miRNA Regulatory Networks Associated with Peripheral Vascular Diseases |
title_fullStr | miRNA Regulatory Networks Associated with Peripheral Vascular Diseases |
title_full_unstemmed | miRNA Regulatory Networks Associated with Peripheral Vascular Diseases |
title_short | miRNA Regulatory Networks Associated with Peripheral Vascular Diseases |
title_sort | mirna regulatory networks associated with peripheral vascular diseases |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9224609/ https://www.ncbi.nlm.nih.gov/pubmed/35743538 http://dx.doi.org/10.3390/jcm11123470 |
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