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Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings
Colon polyps, small clump of cells on the lining of the colon, can lead to colorectal cancer (CRC), one of the leading types of cancer globally. Hence, early detection of these polyps automatically is crucial in the prevention of CRC. The deep learning models proposed for the detection and segmentat...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9225047/ https://www.ncbi.nlm.nih.gov/pubmed/35735968 http://dx.doi.org/10.3390/jimaging8060169 |
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author | Karmakar, Ranit Nooshabadi, Saeid |
author_facet | Karmakar, Ranit Nooshabadi, Saeid |
author_sort | Karmakar, Ranit |
collection | PubMed |
description | Colon polyps, small clump of cells on the lining of the colon, can lead to colorectal cancer (CRC), one of the leading types of cancer globally. Hence, early detection of these polyps automatically is crucial in the prevention of CRC. The deep learning models proposed for the detection and segmentation of colorectal polyps are resource-consuming. This paper proposes a lightweight deep learning model for colorectal polyp segmentation that achieved state-of-the-art accuracy while significantly reducing the model size and complexity. The proposed deep learning autoencoder model employs a set of state-of-the-art architectural blocks and optimization objective functions to achieve the desired efficiency. The model is trained and tested on five publicly available colorectal polyp segmentation datasets (CVC-ClinicDB, CVC-ColonDB, EndoScene, Kvasir, and ETIS). We also performed ablation testing on the model to test various aspects of the autoencoder architecture. We performed the model evaluation by using most of the common image-segmentation metrics. The backbone model achieved a DICE score of 0.935 on the Kvasir dataset and 0.945 on the CVC-ClinicDB dataset, improving the accuracy by 4.12% and 5.12%, respectively, over the current state-of-the-art network, while using 88 times fewer parameters, 40 times less storage space, and being computationally 17 times more efficient. Our ablation study showed that the addition of ConvSkip in the autoencoder slightly improves the model’s performance but it was not significant (p-value = 0.815). |
format | Online Article Text |
id | pubmed-9225047 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-92250472022-06-24 Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings Karmakar, Ranit Nooshabadi, Saeid J Imaging Article Colon polyps, small clump of cells on the lining of the colon, can lead to colorectal cancer (CRC), one of the leading types of cancer globally. Hence, early detection of these polyps automatically is crucial in the prevention of CRC. The deep learning models proposed for the detection and segmentation of colorectal polyps are resource-consuming. This paper proposes a lightweight deep learning model for colorectal polyp segmentation that achieved state-of-the-art accuracy while significantly reducing the model size and complexity. The proposed deep learning autoencoder model employs a set of state-of-the-art architectural blocks and optimization objective functions to achieve the desired efficiency. The model is trained and tested on five publicly available colorectal polyp segmentation datasets (CVC-ClinicDB, CVC-ColonDB, EndoScene, Kvasir, and ETIS). We also performed ablation testing on the model to test various aspects of the autoencoder architecture. We performed the model evaluation by using most of the common image-segmentation metrics. The backbone model achieved a DICE score of 0.935 on the Kvasir dataset and 0.945 on the CVC-ClinicDB dataset, improving the accuracy by 4.12% and 5.12%, respectively, over the current state-of-the-art network, while using 88 times fewer parameters, 40 times less storage space, and being computationally 17 times more efficient. Our ablation study showed that the addition of ConvSkip in the autoencoder slightly improves the model’s performance but it was not significant (p-value = 0.815). MDPI 2022-06-14 /pmc/articles/PMC9225047/ /pubmed/35735968 http://dx.doi.org/10.3390/jimaging8060169 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Karmakar, Ranit Nooshabadi, Saeid Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings |
title | Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings |
title_full | Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings |
title_fullStr | Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings |
title_full_unstemmed | Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings |
title_short | Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings |
title_sort | mobile-polypnet: lightweight colon polyp segmentation network for low-resource settings |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9225047/ https://www.ncbi.nlm.nih.gov/pubmed/35735968 http://dx.doi.org/10.3390/jimaging8060169 |
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