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Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings

Colon polyps, small clump of cells on the lining of the colon, can lead to colorectal cancer (CRC), one of the leading types of cancer globally. Hence, early detection of these polyps automatically is crucial in the prevention of CRC. The deep learning models proposed for the detection and segmentat...

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Autores principales: Karmakar, Ranit, Nooshabadi, Saeid
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9225047/
https://www.ncbi.nlm.nih.gov/pubmed/35735968
http://dx.doi.org/10.3390/jimaging8060169
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author Karmakar, Ranit
Nooshabadi, Saeid
author_facet Karmakar, Ranit
Nooshabadi, Saeid
author_sort Karmakar, Ranit
collection PubMed
description Colon polyps, small clump of cells on the lining of the colon, can lead to colorectal cancer (CRC), one of the leading types of cancer globally. Hence, early detection of these polyps automatically is crucial in the prevention of CRC. The deep learning models proposed for the detection and segmentation of colorectal polyps are resource-consuming. This paper proposes a lightweight deep learning model for colorectal polyp segmentation that achieved state-of-the-art accuracy while significantly reducing the model size and complexity. The proposed deep learning autoencoder model employs a set of state-of-the-art architectural blocks and optimization objective functions to achieve the desired efficiency. The model is trained and tested on five publicly available colorectal polyp segmentation datasets (CVC-ClinicDB, CVC-ColonDB, EndoScene, Kvasir, and ETIS). We also performed ablation testing on the model to test various aspects of the autoencoder architecture. We performed the model evaluation by using most of the common image-segmentation metrics. The backbone model achieved a DICE score of 0.935 on the Kvasir dataset and 0.945 on the CVC-ClinicDB dataset, improving the accuracy by 4.12% and 5.12%, respectively, over the current state-of-the-art network, while using 88 times fewer parameters, 40 times less storage space, and being computationally 17 times more efficient. Our ablation study showed that the addition of ConvSkip in the autoencoder slightly improves the model’s performance but it was not significant (p-value = 0.815).
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spelling pubmed-92250472022-06-24 Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings Karmakar, Ranit Nooshabadi, Saeid J Imaging Article Colon polyps, small clump of cells on the lining of the colon, can lead to colorectal cancer (CRC), one of the leading types of cancer globally. Hence, early detection of these polyps automatically is crucial in the prevention of CRC. The deep learning models proposed for the detection and segmentation of colorectal polyps are resource-consuming. This paper proposes a lightweight deep learning model for colorectal polyp segmentation that achieved state-of-the-art accuracy while significantly reducing the model size and complexity. The proposed deep learning autoencoder model employs a set of state-of-the-art architectural blocks and optimization objective functions to achieve the desired efficiency. The model is trained and tested on five publicly available colorectal polyp segmentation datasets (CVC-ClinicDB, CVC-ColonDB, EndoScene, Kvasir, and ETIS). We also performed ablation testing on the model to test various aspects of the autoencoder architecture. We performed the model evaluation by using most of the common image-segmentation metrics. The backbone model achieved a DICE score of 0.935 on the Kvasir dataset and 0.945 on the CVC-ClinicDB dataset, improving the accuracy by 4.12% and 5.12%, respectively, over the current state-of-the-art network, while using 88 times fewer parameters, 40 times less storage space, and being computationally 17 times more efficient. Our ablation study showed that the addition of ConvSkip in the autoencoder slightly improves the model’s performance but it was not significant (p-value = 0.815). MDPI 2022-06-14 /pmc/articles/PMC9225047/ /pubmed/35735968 http://dx.doi.org/10.3390/jimaging8060169 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Karmakar, Ranit
Nooshabadi, Saeid
Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings
title Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings
title_full Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings
title_fullStr Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings
title_full_unstemmed Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings
title_short Mobile-PolypNet: Lightweight Colon Polyp Segmentation Network for Low-Resource Settings
title_sort mobile-polypnet: lightweight colon polyp segmentation network for low-resource settings
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9225047/
https://www.ncbi.nlm.nih.gov/pubmed/35735968
http://dx.doi.org/10.3390/jimaging8060169
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