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Characterization of the complete chloroplast genome of Cycas ferruginea, a vulnerable species

Cycas ferruginea F. N. Wei (1994) is recorded in the list of wild plant protection in China as a national first-class protected plant. The complete chloroplast genome of C. ferruginea was analyzed for the first time in this article. The genome is 162,045 bp in length, which contains a pair of invert...

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Autores principales: Yang, Xuan, Deng, Tao, Tang, Wenxiu, Wu, Tingting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9225770/
https://www.ncbi.nlm.nih.gov/pubmed/35756445
http://dx.doi.org/10.1080/23802359.2022.2082894
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author Yang, Xuan
Deng, Tao
Tang, Wenxiu
Wu, Tingting
author_facet Yang, Xuan
Deng, Tao
Tang, Wenxiu
Wu, Tingting
author_sort Yang, Xuan
collection PubMed
description Cycas ferruginea F. N. Wei (1994) is recorded in the list of wild plant protection in China as a national first-class protected plant. The complete chloroplast genome of C. ferruginea was analyzed for the first time in this article. The genome is 162,045 bp in length, which contains a pair of inverted repeats (IRs) of 25,048 bp each, a large single-copy (LSC) region of 88,827 bp, and a small single-copy (SSC) region of 23,122 bp. The genome comprises a total of 130 encoded genes, including 85 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. The total GC content is 39.44%, and the corresponding values of the LSC, SSC, and IRs are 38.73%, 36.56%, and 42.02%, respectively. The phylogenetic relationships were reconstructed based on the complete chloroplast genome sequences of 16 species. Results showed that C. ferruginea is close to C. debaoensis, C. bifida, and C. szechuanensis.
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spelling pubmed-92257702022-06-24 Characterization of the complete chloroplast genome of Cycas ferruginea, a vulnerable species Yang, Xuan Deng, Tao Tang, Wenxiu Wu, Tingting Mitochondrial DNA B Resour Mitogenome Announcement Cycas ferruginea F. N. Wei (1994) is recorded in the list of wild plant protection in China as a national first-class protected plant. The complete chloroplast genome of C. ferruginea was analyzed for the first time in this article. The genome is 162,045 bp in length, which contains a pair of inverted repeats (IRs) of 25,048 bp each, a large single-copy (LSC) region of 88,827 bp, and a small single-copy (SSC) region of 23,122 bp. The genome comprises a total of 130 encoded genes, including 85 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. The total GC content is 39.44%, and the corresponding values of the LSC, SSC, and IRs are 38.73%, 36.56%, and 42.02%, respectively. The phylogenetic relationships were reconstructed based on the complete chloroplast genome sequences of 16 species. Results showed that C. ferruginea is close to C. debaoensis, C. bifida, and C. szechuanensis. Taylor & Francis 2022-06-14 /pmc/articles/PMC9225770/ /pubmed/35756445 http://dx.doi.org/10.1080/23802359.2022.2082894 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yang, Xuan
Deng, Tao
Tang, Wenxiu
Wu, Tingting
Characterization of the complete chloroplast genome of Cycas ferruginea, a vulnerable species
title Characterization of the complete chloroplast genome of Cycas ferruginea, a vulnerable species
title_full Characterization of the complete chloroplast genome of Cycas ferruginea, a vulnerable species
title_fullStr Characterization of the complete chloroplast genome of Cycas ferruginea, a vulnerable species
title_full_unstemmed Characterization of the complete chloroplast genome of Cycas ferruginea, a vulnerable species
title_short Characterization of the complete chloroplast genome of Cycas ferruginea, a vulnerable species
title_sort characterization of the complete chloroplast genome of cycas ferruginea, a vulnerable species
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9225770/
https://www.ncbi.nlm.nih.gov/pubmed/35756445
http://dx.doi.org/10.1080/23802359.2022.2082894
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