Sequencing of the complete chloroplast genome of Rubia yunnanensis Diels and its phylogenetic analysis

Rubia yunnanensis Diels, an important medicinal herb, is mainly distributed in Yunnan province, Southwest China. In this study, the complete chloroplast genome of R. yunnanensis was successfully sequenced. The assembled chloroplast genome was 155,108 bp in length with an overall GC content of 36.98%...

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Autores principales: Wang, Wei, Xu, Tao, Song, Xiangwen, Chen, Cunwu, Liu, Dong, Han, Bangxing, Yi, Shanyong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Plastome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9225772/
https://www.ncbi.nlm.nih.gov/pubmed/35756430
http://dx.doi.org/10.1080/23802359.2022.2086496
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author Wang, Wei
Xu, Tao
Song, Xiangwen
Chen, Cunwu
Liu, Dong
Han, Bangxing
Yi, Shanyong
author_facet Wang, Wei
Xu, Tao
Song, Xiangwen
Chen, Cunwu
Liu, Dong
Han, Bangxing
Yi, Shanyong
author_sort Wang, Wei
collection PubMed
description Rubia yunnanensis Diels, an important medicinal herb, is mainly distributed in Yunnan province, Southwest China. In this study, the complete chloroplast genome of R. yunnanensis was successfully sequenced. The assembled chloroplast genome was 155,108 bp in length with an overall GC content of 36.98%, including a pair of inverted repeat (IR) regions (26,573 bp, each), respectively, a large single-copy (LSC) region (84,848 bp) and a small single-copy (SSC) region (17,114 bp). The genome contained 131 genes, comprising 85 protein-coding genes, 37 tRNA genes, eight rRNA genes, and one pseudogene. The phylogenetic analysis indicated that R. yunnanensis was closely related to R. cordifolia.
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spelling pubmed-92257722022-06-24 Sequencing of the complete chloroplast genome of Rubia yunnanensis Diels and its phylogenetic analysis Wang, Wei Xu, Tao Song, Xiangwen Chen, Cunwu Liu, Dong Han, Bangxing Yi, Shanyong Mitochondrial DNA B Resour Plastome Announcement Rubia yunnanensis Diels, an important medicinal herb, is mainly distributed in Yunnan province, Southwest China. In this study, the complete chloroplast genome of R. yunnanensis was successfully sequenced. The assembled chloroplast genome was 155,108 bp in length with an overall GC content of 36.98%, including a pair of inverted repeat (IR) regions (26,573 bp, each), respectively, a large single-copy (LSC) region (84,848 bp) and a small single-copy (SSC) region (17,114 bp). The genome contained 131 genes, comprising 85 protein-coding genes, 37 tRNA genes, eight rRNA genes, and one pseudogene. The phylogenetic analysis indicated that R. yunnanensis was closely related to R. cordifolia. Taylor & Francis 2022-06-20 /pmc/articles/PMC9225772/ /pubmed/35756430 http://dx.doi.org/10.1080/23802359.2022.2086496 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Wang, Wei
Xu, Tao
Song, Xiangwen
Chen, Cunwu
Liu, Dong
Han, Bangxing
Yi, Shanyong
Sequencing of the complete chloroplast genome of Rubia yunnanensis Diels and its phylogenetic analysis
title Sequencing of the complete chloroplast genome of Rubia yunnanensis Diels and its phylogenetic analysis
title_full Sequencing of the complete chloroplast genome of Rubia yunnanensis Diels and its phylogenetic analysis
title_fullStr Sequencing of the complete chloroplast genome of Rubia yunnanensis Diels and its phylogenetic analysis
title_full_unstemmed Sequencing of the complete chloroplast genome of Rubia yunnanensis Diels and its phylogenetic analysis
title_short Sequencing of the complete chloroplast genome of Rubia yunnanensis Diels and its phylogenetic analysis
title_sort sequencing of the complete chloroplast genome of rubia yunnanensis diels and its phylogenetic analysis
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9225772/
https://www.ncbi.nlm.nih.gov/pubmed/35756430
http://dx.doi.org/10.1080/23802359.2022.2086496
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