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Learning Models for Traumatic Brain Injury Mortality Prediction on Pediatric Electronic Health Records

BACKGROUND: Traumatic Brain Injury (TBI) is one of the leading causes of injury related mortality in the world, with severe cases reaching mortality rates of 30-40%. It is highly heterogeneous both in causes and consequences, complicating medical interpretation and prognosis. Gathering clinical, dem...

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Autores principales: Fonseca, João, Liu, Xiuyun, Oliveira, Hélder P., Pereira, Tania
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9226580/
https://www.ncbi.nlm.nih.gov/pubmed/35756926
http://dx.doi.org/10.3389/fneur.2022.859068
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author Fonseca, João
Liu, Xiuyun
Oliveira, Hélder P.
Pereira, Tania
author_facet Fonseca, João
Liu, Xiuyun
Oliveira, Hélder P.
Pereira, Tania
author_sort Fonseca, João
collection PubMed
description BACKGROUND: Traumatic Brain Injury (TBI) is one of the leading causes of injury related mortality in the world, with severe cases reaching mortality rates of 30-40%. It is highly heterogeneous both in causes and consequences, complicating medical interpretation and prognosis. Gathering clinical, demographic, and laboratory data to perform a prognosis requires time and skill in several clinical specialties. Machine learning (ML) methods can take advantage of the data and guide physicians toward a better prognosis and, consequently, better healthcare. The objective of this study was to develop and test a wide range of machine learning models and evaluate their capability of predicting mortality of TBI, at hospital discharge, while assessing the similarity between the predictive value of the data and clinical significance. METHODS: The used dataset is the Hackathon Pediatric Traumatic Brain Injury (HPTBI) dataset, composed of electronic health records containing clinical annotations and demographic data of 300 patients. Four different classification models were tested, either with or without feature selection. For each combination of the classification model and feature selection method, the area under the receiver operator curve (ROC-AUC), balanced accuracy, precision, and recall were calculated. RESULTS: Methods based on decision trees perform better when using all features (Random Forest, AUC = 0.86 and XGBoost, AUC = 0.91) but other models require prior feature selection to obtain the best results (k-Nearest Neighbors, AUC = 0.90 and Artificial Neural Networks, AUC = 0.84). Additionally, Random Forest and XGBoost allow assessing the feature's importance, which could give insights for future strategies on the clinical routine. CONCLUSION: Predictive capability depends greatly on the combination of model and feature selection methods used but, overall, ML models showed a very good performance in mortality prediction for TBI. The feature importance results indicate that predictive value is not directly related to clinical significance.
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spelling pubmed-92265802022-06-25 Learning Models for Traumatic Brain Injury Mortality Prediction on Pediatric Electronic Health Records Fonseca, João Liu, Xiuyun Oliveira, Hélder P. Pereira, Tania Front Neurol Neurology BACKGROUND: Traumatic Brain Injury (TBI) is one of the leading causes of injury related mortality in the world, with severe cases reaching mortality rates of 30-40%. It is highly heterogeneous both in causes and consequences, complicating medical interpretation and prognosis. Gathering clinical, demographic, and laboratory data to perform a prognosis requires time and skill in several clinical specialties. Machine learning (ML) methods can take advantage of the data and guide physicians toward a better prognosis and, consequently, better healthcare. The objective of this study was to develop and test a wide range of machine learning models and evaluate their capability of predicting mortality of TBI, at hospital discharge, while assessing the similarity between the predictive value of the data and clinical significance. METHODS: The used dataset is the Hackathon Pediatric Traumatic Brain Injury (HPTBI) dataset, composed of electronic health records containing clinical annotations and demographic data of 300 patients. Four different classification models were tested, either with or without feature selection. For each combination of the classification model and feature selection method, the area under the receiver operator curve (ROC-AUC), balanced accuracy, precision, and recall were calculated. RESULTS: Methods based on decision trees perform better when using all features (Random Forest, AUC = 0.86 and XGBoost, AUC = 0.91) but other models require prior feature selection to obtain the best results (k-Nearest Neighbors, AUC = 0.90 and Artificial Neural Networks, AUC = 0.84). Additionally, Random Forest and XGBoost allow assessing the feature's importance, which could give insights for future strategies on the clinical routine. CONCLUSION: Predictive capability depends greatly on the combination of model and feature selection methods used but, overall, ML models showed a very good performance in mortality prediction for TBI. The feature importance results indicate that predictive value is not directly related to clinical significance. Frontiers Media S.A. 2022-06-10 /pmc/articles/PMC9226580/ /pubmed/35756926 http://dx.doi.org/10.3389/fneur.2022.859068 Text en Copyright © 2022 Fonseca, Liu, Oliveira and Pereira. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neurology
Fonseca, João
Liu, Xiuyun
Oliveira, Hélder P.
Pereira, Tania
Learning Models for Traumatic Brain Injury Mortality Prediction on Pediatric Electronic Health Records
title Learning Models for Traumatic Brain Injury Mortality Prediction on Pediatric Electronic Health Records
title_full Learning Models for Traumatic Brain Injury Mortality Prediction on Pediatric Electronic Health Records
title_fullStr Learning Models for Traumatic Brain Injury Mortality Prediction on Pediatric Electronic Health Records
title_full_unstemmed Learning Models for Traumatic Brain Injury Mortality Prediction on Pediatric Electronic Health Records
title_short Learning Models for Traumatic Brain Injury Mortality Prediction on Pediatric Electronic Health Records
title_sort learning models for traumatic brain injury mortality prediction on pediatric electronic health records
topic Neurology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9226580/
https://www.ncbi.nlm.nih.gov/pubmed/35756926
http://dx.doi.org/10.3389/fneur.2022.859068
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