Cargando…

Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough

Magnetotactic bacteria (MTB) have been found in a wide variety of marine habitats, ranging from intertidal sediments to deep-sea seamounts. Deep-sea hydrothermal fields are rich in metal sulfides, which are suitable areas for the growth of MTB. However, MTB in hydrothermal fields have never been rep...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Si, Yu, Min, Zhang, Wenyan, He, Kuang, Pan, Hongmiao, Cui, Kaixuan, Zhao, Yicong, Zhang, Xiao-Hua, Xiao, Tian, Zhang, Wuchang, Wu, Long-Fei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9226615/
https://www.ncbi.nlm.nih.gov/pubmed/35756025
http://dx.doi.org/10.3389/fmicb.2022.887136
_version_ 1784733945574719488
author Chen, Si
Yu, Min
Zhang, Wenyan
He, Kuang
Pan, Hongmiao
Cui, Kaixuan
Zhao, Yicong
Zhang, Xiao-Hua
Xiao, Tian
Zhang, Wuchang
Wu, Long-Fei
author_facet Chen, Si
Yu, Min
Zhang, Wenyan
He, Kuang
Pan, Hongmiao
Cui, Kaixuan
Zhao, Yicong
Zhang, Xiao-Hua
Xiao, Tian
Zhang, Wuchang
Wu, Long-Fei
author_sort Chen, Si
collection PubMed
description Magnetotactic bacteria (MTB) have been found in a wide variety of marine habitats, ranging from intertidal sediments to deep-sea seamounts. Deep-sea hydrothermal fields are rich in metal sulfides, which are suitable areas for the growth of MTB. However, MTB in hydrothermal fields have never been reported. Here, the presence of MTB in sediments from the Tangyin hydrothermal field was analyzed by 16S rRNA gene amplicon analysis, metagenomics, and transmission electron microscopy. Sequencing 16S rRNA gene yielded a total of 709 MTB sequences belonging to 20 OTUs, affiliated with Desulfobacterota, Alphaproteobacteria, and Nitrospirae. Three shapes of magnetofossil were identified by transmission electron microscopy: elongated-prismatic, bullet-shaped, and cuboctahedron. All of these structures were composed of Fe(3)O(4). A total of 121 sequences were found to be homologous to the published MTB magnetosome-function-related genes, and relevant domains were identified. Further analysis revealed that diverse MTB are present in the Tangyin hydrothermal field, and that multicellular magnetotactic prokaryote (MMPs) might be the dominant MTB.
format Online
Article
Text
id pubmed-9226615
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-92266152022-06-25 Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough Chen, Si Yu, Min Zhang, Wenyan He, Kuang Pan, Hongmiao Cui, Kaixuan Zhao, Yicong Zhang, Xiao-Hua Xiao, Tian Zhang, Wuchang Wu, Long-Fei Front Microbiol Microbiology Magnetotactic bacteria (MTB) have been found in a wide variety of marine habitats, ranging from intertidal sediments to deep-sea seamounts. Deep-sea hydrothermal fields are rich in metal sulfides, which are suitable areas for the growth of MTB. However, MTB in hydrothermal fields have never been reported. Here, the presence of MTB in sediments from the Tangyin hydrothermal field was analyzed by 16S rRNA gene amplicon analysis, metagenomics, and transmission electron microscopy. Sequencing 16S rRNA gene yielded a total of 709 MTB sequences belonging to 20 OTUs, affiliated with Desulfobacterota, Alphaproteobacteria, and Nitrospirae. Three shapes of magnetofossil were identified by transmission electron microscopy: elongated-prismatic, bullet-shaped, and cuboctahedron. All of these structures were composed of Fe(3)O(4). A total of 121 sequences were found to be homologous to the published MTB magnetosome-function-related genes, and relevant domains were identified. Further analysis revealed that diverse MTB are present in the Tangyin hydrothermal field, and that multicellular magnetotactic prokaryote (MMPs) might be the dominant MTB. Frontiers Media S.A. 2022-06-10 /pmc/articles/PMC9226615/ /pubmed/35756025 http://dx.doi.org/10.3389/fmicb.2022.887136 Text en Copyright © 2022 Chen, Yu, Zhang, He, Pan, Cui, Zhao, Zhang, Xiao, Zhang and Wu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Chen, Si
Yu, Min
Zhang, Wenyan
He, Kuang
Pan, Hongmiao
Cui, Kaixuan
Zhao, Yicong
Zhang, Xiao-Hua
Xiao, Tian
Zhang, Wuchang
Wu, Long-Fei
Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough
title Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough
title_full Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough
title_fullStr Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough
title_full_unstemmed Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough
title_short Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough
title_sort metagenomic and microscopic analysis of magnetotactic bacteria in tangyin hydrothermal field of okinawa trough
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9226615/
https://www.ncbi.nlm.nih.gov/pubmed/35756025
http://dx.doi.org/10.3389/fmicb.2022.887136
work_keys_str_mv AT chensi metagenomicandmicroscopicanalysisofmagnetotacticbacteriaintangyinhydrothermalfieldofokinawatrough
AT yumin metagenomicandmicroscopicanalysisofmagnetotacticbacteriaintangyinhydrothermalfieldofokinawatrough
AT zhangwenyan metagenomicandmicroscopicanalysisofmagnetotacticbacteriaintangyinhydrothermalfieldofokinawatrough
AT hekuang metagenomicandmicroscopicanalysisofmagnetotacticbacteriaintangyinhydrothermalfieldofokinawatrough
AT panhongmiao metagenomicandmicroscopicanalysisofmagnetotacticbacteriaintangyinhydrothermalfieldofokinawatrough
AT cuikaixuan metagenomicandmicroscopicanalysisofmagnetotacticbacteriaintangyinhydrothermalfieldofokinawatrough
AT zhaoyicong metagenomicandmicroscopicanalysisofmagnetotacticbacteriaintangyinhydrothermalfieldofokinawatrough
AT zhangxiaohua metagenomicandmicroscopicanalysisofmagnetotacticbacteriaintangyinhydrothermalfieldofokinawatrough
AT xiaotian metagenomicandmicroscopicanalysisofmagnetotacticbacteriaintangyinhydrothermalfieldofokinawatrough
AT zhangwuchang metagenomicandmicroscopicanalysisofmagnetotacticbacteriaintangyinhydrothermalfieldofokinawatrough
AT wulongfei metagenomicandmicroscopicanalysisofmagnetotacticbacteriaintangyinhydrothermalfieldofokinawatrough