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Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough
Magnetotactic bacteria (MTB) have been found in a wide variety of marine habitats, ranging from intertidal sediments to deep-sea seamounts. Deep-sea hydrothermal fields are rich in metal sulfides, which are suitable areas for the growth of MTB. However, MTB in hydrothermal fields have never been rep...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9226615/ https://www.ncbi.nlm.nih.gov/pubmed/35756025 http://dx.doi.org/10.3389/fmicb.2022.887136 |
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author | Chen, Si Yu, Min Zhang, Wenyan He, Kuang Pan, Hongmiao Cui, Kaixuan Zhao, Yicong Zhang, Xiao-Hua Xiao, Tian Zhang, Wuchang Wu, Long-Fei |
author_facet | Chen, Si Yu, Min Zhang, Wenyan He, Kuang Pan, Hongmiao Cui, Kaixuan Zhao, Yicong Zhang, Xiao-Hua Xiao, Tian Zhang, Wuchang Wu, Long-Fei |
author_sort | Chen, Si |
collection | PubMed |
description | Magnetotactic bacteria (MTB) have been found in a wide variety of marine habitats, ranging from intertidal sediments to deep-sea seamounts. Deep-sea hydrothermal fields are rich in metal sulfides, which are suitable areas for the growth of MTB. However, MTB in hydrothermal fields have never been reported. Here, the presence of MTB in sediments from the Tangyin hydrothermal field was analyzed by 16S rRNA gene amplicon analysis, metagenomics, and transmission electron microscopy. Sequencing 16S rRNA gene yielded a total of 709 MTB sequences belonging to 20 OTUs, affiliated with Desulfobacterota, Alphaproteobacteria, and Nitrospirae. Three shapes of magnetofossil were identified by transmission electron microscopy: elongated-prismatic, bullet-shaped, and cuboctahedron. All of these structures were composed of Fe(3)O(4). A total of 121 sequences were found to be homologous to the published MTB magnetosome-function-related genes, and relevant domains were identified. Further analysis revealed that diverse MTB are present in the Tangyin hydrothermal field, and that multicellular magnetotactic prokaryote (MMPs) might be the dominant MTB. |
format | Online Article Text |
id | pubmed-9226615 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92266152022-06-25 Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough Chen, Si Yu, Min Zhang, Wenyan He, Kuang Pan, Hongmiao Cui, Kaixuan Zhao, Yicong Zhang, Xiao-Hua Xiao, Tian Zhang, Wuchang Wu, Long-Fei Front Microbiol Microbiology Magnetotactic bacteria (MTB) have been found in a wide variety of marine habitats, ranging from intertidal sediments to deep-sea seamounts. Deep-sea hydrothermal fields are rich in metal sulfides, which are suitable areas for the growth of MTB. However, MTB in hydrothermal fields have never been reported. Here, the presence of MTB in sediments from the Tangyin hydrothermal field was analyzed by 16S rRNA gene amplicon analysis, metagenomics, and transmission electron microscopy. Sequencing 16S rRNA gene yielded a total of 709 MTB sequences belonging to 20 OTUs, affiliated with Desulfobacterota, Alphaproteobacteria, and Nitrospirae. Three shapes of magnetofossil were identified by transmission electron microscopy: elongated-prismatic, bullet-shaped, and cuboctahedron. All of these structures were composed of Fe(3)O(4). A total of 121 sequences were found to be homologous to the published MTB magnetosome-function-related genes, and relevant domains were identified. Further analysis revealed that diverse MTB are present in the Tangyin hydrothermal field, and that multicellular magnetotactic prokaryote (MMPs) might be the dominant MTB. Frontiers Media S.A. 2022-06-10 /pmc/articles/PMC9226615/ /pubmed/35756025 http://dx.doi.org/10.3389/fmicb.2022.887136 Text en Copyright © 2022 Chen, Yu, Zhang, He, Pan, Cui, Zhao, Zhang, Xiao, Zhang and Wu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Chen, Si Yu, Min Zhang, Wenyan He, Kuang Pan, Hongmiao Cui, Kaixuan Zhao, Yicong Zhang, Xiao-Hua Xiao, Tian Zhang, Wuchang Wu, Long-Fei Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough |
title | Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough |
title_full | Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough |
title_fullStr | Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough |
title_full_unstemmed | Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough |
title_short | Metagenomic and Microscopic Analysis of Magnetotactic Bacteria in Tangyin Hydrothermal Field of Okinawa Trough |
title_sort | metagenomic and microscopic analysis of magnetotactic bacteria in tangyin hydrothermal field of okinawa trough |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9226615/ https://www.ncbi.nlm.nih.gov/pubmed/35756025 http://dx.doi.org/10.3389/fmicb.2022.887136 |
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