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A state-of-the-art technique to perform cloud-based semantic segmentation using deep learning 3D U-Net architecture

Glioma is the most aggressive and dangerous primary brain tumor with a survival time of less than 14 months. Segmentation of tumors is a necessary task in the image processing of the gliomas and is important for its timely diagnosis and starting a treatment. Using 3D U-net architecture to perform se...

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Autores principales: Shaukat, Zeeshan, Farooq, Qurat ul Ain, Tu, Shanshan, Xiao, Chuangbai, Ali, Saqib
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9229514/
https://www.ncbi.nlm.nih.gov/pubmed/35751030
http://dx.doi.org/10.1186/s12859-022-04794-9
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author Shaukat, Zeeshan
Farooq, Qurat ul Ain
Tu, Shanshan
Xiao, Chuangbai
Ali, Saqib
author_facet Shaukat, Zeeshan
Farooq, Qurat ul Ain
Tu, Shanshan
Xiao, Chuangbai
Ali, Saqib
author_sort Shaukat, Zeeshan
collection PubMed
description Glioma is the most aggressive and dangerous primary brain tumor with a survival time of less than 14 months. Segmentation of tumors is a necessary task in the image processing of the gliomas and is important for its timely diagnosis and starting a treatment. Using 3D U-net architecture to perform semantic segmentation on brain tumor dataset is at the core of deep learning. In this paper, we present a unique cloud-based 3D U-Net method to perform brain tumor segmentation using BRATS dataset. The system was effectively trained by using Adam optimization solver by utilizing multiple hyper parameters. We got an average dice score of 95% which makes our method the first cloud-based method to achieve maximum accuracy. The dice score is calculated by using Sørensen-Dice similarity coefficient. We also performed an extensive literature review of the brain tumor segmentation methods implemented in the last five years to get a state-of-the-art picture of well-known methodologies with a higher dice score. In comparison to the already implemented architectures, our method ranks on top in terms of accuracy in using a cloud-based 3D U-Net framework for glioma segmentation.
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spelling pubmed-92295142022-06-25 A state-of-the-art technique to perform cloud-based semantic segmentation using deep learning 3D U-Net architecture Shaukat, Zeeshan Farooq, Qurat ul Ain Tu, Shanshan Xiao, Chuangbai Ali, Saqib BMC Bioinformatics Research Glioma is the most aggressive and dangerous primary brain tumor with a survival time of less than 14 months. Segmentation of tumors is a necessary task in the image processing of the gliomas and is important for its timely diagnosis and starting a treatment. Using 3D U-net architecture to perform semantic segmentation on brain tumor dataset is at the core of deep learning. In this paper, we present a unique cloud-based 3D U-Net method to perform brain tumor segmentation using BRATS dataset. The system was effectively trained by using Adam optimization solver by utilizing multiple hyper parameters. We got an average dice score of 95% which makes our method the first cloud-based method to achieve maximum accuracy. The dice score is calculated by using Sørensen-Dice similarity coefficient. We also performed an extensive literature review of the brain tumor segmentation methods implemented in the last five years to get a state-of-the-art picture of well-known methodologies with a higher dice score. In comparison to the already implemented architectures, our method ranks on top in terms of accuracy in using a cloud-based 3D U-Net framework for glioma segmentation. BioMed Central 2022-06-24 /pmc/articles/PMC9229514/ /pubmed/35751030 http://dx.doi.org/10.1186/s12859-022-04794-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Shaukat, Zeeshan
Farooq, Qurat ul Ain
Tu, Shanshan
Xiao, Chuangbai
Ali, Saqib
A state-of-the-art technique to perform cloud-based semantic segmentation using deep learning 3D U-Net architecture
title A state-of-the-art technique to perform cloud-based semantic segmentation using deep learning 3D U-Net architecture
title_full A state-of-the-art technique to perform cloud-based semantic segmentation using deep learning 3D U-Net architecture
title_fullStr A state-of-the-art technique to perform cloud-based semantic segmentation using deep learning 3D U-Net architecture
title_full_unstemmed A state-of-the-art technique to perform cloud-based semantic segmentation using deep learning 3D U-Net architecture
title_short A state-of-the-art technique to perform cloud-based semantic segmentation using deep learning 3D U-Net architecture
title_sort state-of-the-art technique to perform cloud-based semantic segmentation using deep learning 3d u-net architecture
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9229514/
https://www.ncbi.nlm.nih.gov/pubmed/35751030
http://dx.doi.org/10.1186/s12859-022-04794-9
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