Cargando…

In-Depth Temporal Transcriptome Profiling of an Alphaherpesvirus Using Nanopore Sequencing

In this work, a long-read sequencing (LRS) technique based on the Oxford Nanopore Technology MinION platform was used for quantifying and kinetic characterization of the poly(A) fraction of bovine alphaherpesvirus type 1 (BoHV-1) lytic transcriptome across a 12-h infection period. Amplification-base...

Descripción completa

Detalles Bibliográficos
Autores principales:	Tombácz, Dóra, Kakuk, Balázs, Torma, Gábor, Csabai, Zsolt, Gulyás, Gábor, Tamás, Vivien, Zádori, Zoltán, Jefferson, Victoria A., Meyer, Florencia, Boldogkői, Zsolt
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9229804/ https://www.ncbi.nlm.nih.gov/pubmed/35746760 http://dx.doi.org/10.3390/v14061289

Ejemplares similares

Time-course profiling of bovine alphaherpesvirus 1.1 transcriptome using multiplatform sequencing
por: Moldován, Norbert, et al.
Publicado: (2020)

Hybrid sequencing discloses unique aspects of the transcriptomic architecture in equid alphaherpesvirus 1
por: Tombácz, Dóra, et al.
Publicado: (2023)

Dynamic Transcriptome Sequencing of Bovine Alphaherpesvirus Type 1 and Host Cells Carried Out by a Multi-Technique Approach
por: Tombácz, Dóra, et al.
Publicado: (2021)

Combined nanopore and single-molecule real-time sequencing survey of human betaherpesvirus 5 transcriptome
por: Kakuk, Balázs, et al.
Publicado: (2021)

Time course profiling of host cell response to herpesvirus infection using nanopore and synthetic long-read transcriptome sequencing
por: Maróti, Zoltán, et al.
Publicado: (2021)

High temporal resolution Nanopore sequencing dataset of SARS-CoV-2 and host cell RNAs
por: Tombácz, Dóra, et al.
Publicado: (2022)

In-depth Temporal Transcriptome Profiling of Monkeypox and Host Cells using Nanopore Sequencing
por: Kakuk, Balázs, et al.
Publicado: (2023)

Nanopore Assay Reveals Cell-Type-Dependent Gene Expression of Vesicular Stomatitis Indiana Virus and Differential Host Cell Response
por: Kakuk, Balázs, et al.
Publicado: (2021)

Combined Short and Long-Read Sequencing Reveals a Complex Transcriptomic Architecture of African Swine Fever Virus
por: Torma, Gábor, et al.
Publicado: (2021)

Transcriptome dataset of six human pathogen RNA viruses generated by nanopore sequencing
por: Prazsák, István, et al.
Publicado: (2022)

Short and Long-Read Sequencing Survey of the Dynamic Transcriptomes of African Swine Fever Virus and the Host Cells
por: Olasz, Ferenc, et al.
Publicado: (2020)

KSHV 3.0: A State-of-the-Art Annotation of the Kaposi’s Sarcoma-Associated Herpesvirus Transcriptome Using Cross-Platform Sequencing
por: Prazsák, István, et al.
Publicado: (2023)

Multiple Long-Read Sequencing Survey of Herpes Simplex Virus Dynamic Transcriptome
por: Tombácz, Dóra, et al.
Publicado: (2019)

An Integrated Sequencing Approach for Updating the Pseudorabies Virus Transcriptome
por: Torma, Gábor, et al.
Publicado: (2021)

Meta-analytic approach for transcriptome profiling of herpes simplex virus type 1
por: Tombácz, Dóra, et al.
Publicado: (2020)

Time-Course Transcriptome Profiling of a Poxvirus Using Long-Read Full-Length Assay
por: Tombácz, Dóra, et al.
Publicado: (2021)

Identification of herpesvirus transcripts from genomic regions around the replication origins
por: Torma, Gábor, et al.
Publicado: (2023)

Time-course transcriptome analysis of host cell response to poxvirus infection using a dual long-read sequencing approach
por: Maróti, Zoltán, et al.
Publicado: (2021)

Dual isoform sequencing reveals complex transcriptomic and epitranscriptomic landscapes of a prototype baculovirus
por: Torma, Gábor, et al.
Publicado: (2022)

Long-Read Sequencing Revealed an Extensive Transcript Complexity in Herpesviruses
por: Tombácz, Dóra, et al.
Publicado: (2018)

Analysis of the Complete Genome Sequence of a Novel, Pseudorabies Virus Strain Isolated in Southeast Europe
por: Csabai, Zsolt, et al.
Publicado: (2019)

Genetic Adaptation of Porcine Circovirus Type 1 to Cultured Porcine Kidney Cells Revealed by Single-Molecule Long-Read Sequencing Technology
por: Tombácz, Dóra, et al.
Publicado: (2017)

Template-switching artifacts resemble alternative polyadenylation
por: Balázs, Zsolt, et al.
Publicado: (2019)

Integrative profiling of Epstein–Barr virus transcriptome using a multiplatform approach
por: Fülöp, Ádám, et al.
Publicado: (2022)

Transcriptome-wide analysis of a baculovirus using nanopore sequencing
por: Boldogkői, Zsolt, et al.
Publicado: (2018)

High-Coverage Whole-Exome Sequencing Identifies Candidate Genes for Suicide in Victims with Major Depressive Disorder
por: Tombácz, Dóra, et al.
Publicado: (2017)

Interactions between the transcription and replication machineries regulate the RNA and DNA synthesis in the herpesviruses
por: Boldogkői, Zsolt, et al.
Publicado: (2019)

Characterization of Novel Transcripts in Pseudorabies Virus
por: Tombácz, Dóra, et al.
Publicado: (2015)

Third-generation Sequencing Reveals Extensive Polycistronism and Transcriptional Overlapping in a Baculovirus
por: Moldován, Norbert, et al.
Publicado: (2018)

Long-read sequencing uncovers a complex transcriptome topology in varicella zoster virus
por: Prazsák, István, et al.
Publicado: (2018)

Characterization of the Dynamic Transcriptome of a Herpesvirus with Long-read Single Molecule Real-Time Sequencing
por: Tombácz, Dóra, et al.
Publicado: (2017)

Long-Read Isoform Sequencing Reveals a Hidden Complexity of the Transcriptional Landscape of Herpes Simplex Virus Type 1
por: Tombácz, Dóra, et al.
Publicado: (2017)

Long-Read Sequencing of Human Cytomegalovirus Transcriptome Reveals RNA Isoforms Carrying Distinct Coding Potentials
por: Balázs, Zsolt, et al.
Publicado: (2017)

Strain Kaplan of Pseudorabies Virus Genome Sequenced by PacBio Single-Molecule Real-Time Sequencing Technology
por: Tombácz, Dóra, et al.
Publicado: (2014)

Characterization of pseudorabies virus transcriptome by Illumina sequencing
por: Oláh, Péter, et al.
Publicado: (2015)

Long-Read Sequencing Reveals a GC Pressure during the Evolution of Porcine Endogenous Retrovirus
por: Szűcs, Attila, et al.
Publicado: (2017)

Multi-Platform Sequencing Approach Reveals a Novel Transcriptome Profile in Pseudorabies Virus
por: Moldován, Norbert, et al.
Publicado: (2018)

Full-Length Isoform Sequencing Reveals Novel Transcripts and Substantial Transcriptional Overlaps in a Herpesvirus
por: Tombácz, Dóra, et al.
Publicado: (2016)

Long-read assays shed new light on the transcriptome complexity of a viral pathogen
por: Tombácz, Dóra, et al.
Publicado: (2020)

Long-read sequencing of the human cytomegalovirus transcriptome with the Pacific Biosciences RSII platform
por: Balázs, Zsolt, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_hc0evjrv83rs7dfin9h4tumab2