Cargando…
MTPA_Unet: Multi-Scale Transformer-Position Attention Retinal Vessel Segmentation Network Joint Transformer and CNN
Retinal vessel segmentation is extremely important for risk prediction and treatment of many major diseases. Therefore, accurate segmentation of blood vessel features from retinal images can help assist physicians in diagnosis and treatment. Convolutional neural networks are good at extracting local...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9229851/ https://www.ncbi.nlm.nih.gov/pubmed/35746372 http://dx.doi.org/10.3390/s22124592 |
_version_ | 1784734857977397248 |
---|---|
author | Jiang, Yun Liang, Jing Cheng, Tongtong Lin, Xin Zhang, Yuan Dong, Jinkun |
author_facet | Jiang, Yun Liang, Jing Cheng, Tongtong Lin, Xin Zhang, Yuan Dong, Jinkun |
author_sort | Jiang, Yun |
collection | PubMed |
description | Retinal vessel segmentation is extremely important for risk prediction and treatment of many major diseases. Therefore, accurate segmentation of blood vessel features from retinal images can help assist physicians in diagnosis and treatment. Convolutional neural networks are good at extracting local feature information, but the convolutional block receptive field is limited. Transformer, on the other hand, performs well in modeling long-distance dependencies. Therefore, in this paper, a new network model MTPA_Unet is designed from the perspective of extracting connections between local detailed features and making complements using long-distance dependency information, which is applied to the retinal vessel segmentation task. MTPA_Unet uses multi-resolution image input to enable the network to extract information at different levels. The proposed TPA module not only captures long-distance dependencies, but also focuses on the location information of the vessel pixels to facilitate capillary segmentation. The Transformer is combined with the convolutional neural network in a serial approach, and the original MSA module is replaced by the TPA module to achieve finer segmentation. Finally, the network model is evaluated and analyzed on three recognized retinal image datasets DRIVE, CHASE DB1, and STARE. The evaluation metrics were 0.9718, 0.9762, and 0.9773 for accuracy; 0.8410, 0.8437, and 0.8938 for sensitivity; and 0.8318, 0.8164, and 0.8557 for Dice coefficient. Compared with existing retinal image segmentation methods, the proposed method in this paper achieved better vessel segmentation in all of the publicly available fundus datasets tested performance and results. |
format | Online Article Text |
id | pubmed-9229851 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-92298512022-06-25 MTPA_Unet: Multi-Scale Transformer-Position Attention Retinal Vessel Segmentation Network Joint Transformer and CNN Jiang, Yun Liang, Jing Cheng, Tongtong Lin, Xin Zhang, Yuan Dong, Jinkun Sensors (Basel) Article Retinal vessel segmentation is extremely important for risk prediction and treatment of many major diseases. Therefore, accurate segmentation of blood vessel features from retinal images can help assist physicians in diagnosis and treatment. Convolutional neural networks are good at extracting local feature information, but the convolutional block receptive field is limited. Transformer, on the other hand, performs well in modeling long-distance dependencies. Therefore, in this paper, a new network model MTPA_Unet is designed from the perspective of extracting connections between local detailed features and making complements using long-distance dependency information, which is applied to the retinal vessel segmentation task. MTPA_Unet uses multi-resolution image input to enable the network to extract information at different levels. The proposed TPA module not only captures long-distance dependencies, but also focuses on the location information of the vessel pixels to facilitate capillary segmentation. The Transformer is combined with the convolutional neural network in a serial approach, and the original MSA module is replaced by the TPA module to achieve finer segmentation. Finally, the network model is evaluated and analyzed on three recognized retinal image datasets DRIVE, CHASE DB1, and STARE. The evaluation metrics were 0.9718, 0.9762, and 0.9773 for accuracy; 0.8410, 0.8437, and 0.8938 for sensitivity; and 0.8318, 0.8164, and 0.8557 for Dice coefficient. Compared with existing retinal image segmentation methods, the proposed method in this paper achieved better vessel segmentation in all of the publicly available fundus datasets tested performance and results. MDPI 2022-06-17 /pmc/articles/PMC9229851/ /pubmed/35746372 http://dx.doi.org/10.3390/s22124592 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Jiang, Yun Liang, Jing Cheng, Tongtong Lin, Xin Zhang, Yuan Dong, Jinkun MTPA_Unet: Multi-Scale Transformer-Position Attention Retinal Vessel Segmentation Network Joint Transformer and CNN |
title | MTPA_Unet: Multi-Scale Transformer-Position Attention Retinal Vessel Segmentation Network Joint Transformer and CNN |
title_full | MTPA_Unet: Multi-Scale Transformer-Position Attention Retinal Vessel Segmentation Network Joint Transformer and CNN |
title_fullStr | MTPA_Unet: Multi-Scale Transformer-Position Attention Retinal Vessel Segmentation Network Joint Transformer and CNN |
title_full_unstemmed | MTPA_Unet: Multi-Scale Transformer-Position Attention Retinal Vessel Segmentation Network Joint Transformer and CNN |
title_short | MTPA_Unet: Multi-Scale Transformer-Position Attention Retinal Vessel Segmentation Network Joint Transformer and CNN |
title_sort | mtpa_unet: multi-scale transformer-position attention retinal vessel segmentation network joint transformer and cnn |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9229851/ https://www.ncbi.nlm.nih.gov/pubmed/35746372 http://dx.doi.org/10.3390/s22124592 |
work_keys_str_mv | AT jiangyun mtpaunetmultiscaletransformerpositionattentionretinalvesselsegmentationnetworkjointtransformerandcnn AT liangjing mtpaunetmultiscaletransformerpositionattentionretinalvesselsegmentationnetworkjointtransformerandcnn AT chengtongtong mtpaunetmultiscaletransformerpositionattentionretinalvesselsegmentationnetworkjointtransformerandcnn AT linxin mtpaunetmultiscaletransformerpositionattentionretinalvesselsegmentationnetworkjointtransformerandcnn AT zhangyuan mtpaunetmultiscaletransformerpositionattentionretinalvesselsegmentationnetworkjointtransformerandcnn AT dongjinkun mtpaunetmultiscaletransformerpositionattentionretinalvesselsegmentationnetworkjointtransformerandcnn |