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Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps

AIM OF THE STUDY: Deep neural networks have achieved good performance in breast mass classification in ultrasound imaging. However, their usage in clinical practice is still limited due to the lack of explainability of decisions conducted by the networks. In this study, to address the explainability...

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Autores principales: Byra, Michał, Dobruch-Sobczak, Katarzyna, Piotrzkowska-Wroblewska, Hanna, Klimonda, Ziemowit, Litniewski, Jerzy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Sciendo 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9231514/
https://www.ncbi.nlm.nih.gov/pubmed/35811586
http://dx.doi.org/10.15557/JoU.2022.0013
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author Byra, Michał
Dobruch-Sobczak, Katarzyna
Piotrzkowska-Wroblewska, Hanna
Klimonda, Ziemowit
Litniewski, Jerzy
author_facet Byra, Michał
Dobruch-Sobczak, Katarzyna
Piotrzkowska-Wroblewska, Hanna
Klimonda, Ziemowit
Litniewski, Jerzy
author_sort Byra, Michał
collection PubMed
description AIM OF THE STUDY: Deep neural networks have achieved good performance in breast mass classification in ultrasound imaging. However, their usage in clinical practice is still limited due to the lack of explainability of decisions conducted by the networks. In this study, to address the explainability problem, we generated saliency maps indicating ultrasound image regions important for the network’s classification decisions. MATERIAL AND METHODS: Ultrasound images were collected from 272 breast masses, including 123 malignant and 149 benign. Transfer learning was applied to develop a deep network for breast mass classification. Next, the class activation mapping technique was used to generate saliency maps for each image. Breast mass images were divided into three regions: the breast mass region, the peritumoral region surrounding the breast mass, and the region below the breast mass. The pointing game metric was used to quantitatively assess the overlap between the saliency maps and the three selected US image regions. RESULTS: Deep learning classifier achieved the area under the receiver operating characteristic curve, accuracy, sensitivity, and specificity of 0.887, 0.835, 0.801, and 0.868, respectively. In the case of the correctly classified test US images, analysis of the saliency maps revealed that the decisions of the network could be associated with the three selected regions in 71% of cases. CONCLUSIONS: Our study is an important step toward better understanding of deep learning models developed for breast mass diagnosis. We demonstrated that the decisions made by the network can be related to the appearance of certain tissue regions in breast mass US images.
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spelling pubmed-92315142022-07-08 Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps Byra, Michał Dobruch-Sobczak, Katarzyna Piotrzkowska-Wroblewska, Hanna Klimonda, Ziemowit Litniewski, Jerzy J Ultrason Research Paper AIM OF THE STUDY: Deep neural networks have achieved good performance in breast mass classification in ultrasound imaging. However, their usage in clinical practice is still limited due to the lack of explainability of decisions conducted by the networks. In this study, to address the explainability problem, we generated saliency maps indicating ultrasound image regions important for the network’s classification decisions. MATERIAL AND METHODS: Ultrasound images were collected from 272 breast masses, including 123 malignant and 149 benign. Transfer learning was applied to develop a deep network for breast mass classification. Next, the class activation mapping technique was used to generate saliency maps for each image. Breast mass images were divided into three regions: the breast mass region, the peritumoral region surrounding the breast mass, and the region below the breast mass. The pointing game metric was used to quantitatively assess the overlap between the saliency maps and the three selected US image regions. RESULTS: Deep learning classifier achieved the area under the receiver operating characteristic curve, accuracy, sensitivity, and specificity of 0.887, 0.835, 0.801, and 0.868, respectively. In the case of the correctly classified test US images, analysis of the saliency maps revealed that the decisions of the network could be associated with the three selected regions in 71% of cases. CONCLUSIONS: Our study is an important step toward better understanding of deep learning models developed for breast mass diagnosis. We demonstrated that the decisions made by the network can be related to the appearance of certain tissue regions in breast mass US images. Sciendo 2022-04-27 /pmc/articles/PMC9231514/ /pubmed/35811586 http://dx.doi.org/10.15557/JoU.2022.0013 Text en © 2022 Michał Byra, Katarzyna Dobruch-Sobczak, Hanna Piotrzkowska-Wroblewska, Ziemowit Klimonda, Jerzy Litniewski, published by Sciendo https://creativecommons.org/licenses/by-nc-nd/3.0/This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.
spellingShingle Research Paper
Byra, Michał
Dobruch-Sobczak, Katarzyna
Piotrzkowska-Wroblewska, Hanna
Klimonda, Ziemowit
Litniewski, Jerzy
Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps
title Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps
title_full Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps
title_fullStr Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps
title_full_unstemmed Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps
title_short Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps
title_sort explaining a deep learning based breast ultrasound image classifier with saliency maps
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9231514/
https://www.ncbi.nlm.nih.gov/pubmed/35811586
http://dx.doi.org/10.15557/JoU.2022.0013
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