Cargando…
Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps
AIM OF THE STUDY: Deep neural networks have achieved good performance in breast mass classification in ultrasound imaging. However, their usage in clinical practice is still limited due to the lack of explainability of decisions conducted by the networks. In this study, to address the explainability...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Sciendo
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9231514/ https://www.ncbi.nlm.nih.gov/pubmed/35811586 http://dx.doi.org/10.15557/JoU.2022.0013 |
_version_ | 1784735359960088576 |
---|---|
author | Byra, Michał Dobruch-Sobczak, Katarzyna Piotrzkowska-Wroblewska, Hanna Klimonda, Ziemowit Litniewski, Jerzy |
author_facet | Byra, Michał Dobruch-Sobczak, Katarzyna Piotrzkowska-Wroblewska, Hanna Klimonda, Ziemowit Litniewski, Jerzy |
author_sort | Byra, Michał |
collection | PubMed |
description | AIM OF THE STUDY: Deep neural networks have achieved good performance in breast mass classification in ultrasound imaging. However, their usage in clinical practice is still limited due to the lack of explainability of decisions conducted by the networks. In this study, to address the explainability problem, we generated saliency maps indicating ultrasound image regions important for the network’s classification decisions. MATERIAL AND METHODS: Ultrasound images were collected from 272 breast masses, including 123 malignant and 149 benign. Transfer learning was applied to develop a deep network for breast mass classification. Next, the class activation mapping technique was used to generate saliency maps for each image. Breast mass images were divided into three regions: the breast mass region, the peritumoral region surrounding the breast mass, and the region below the breast mass. The pointing game metric was used to quantitatively assess the overlap between the saliency maps and the three selected US image regions. RESULTS: Deep learning classifier achieved the area under the receiver operating characteristic curve, accuracy, sensitivity, and specificity of 0.887, 0.835, 0.801, and 0.868, respectively. In the case of the correctly classified test US images, analysis of the saliency maps revealed that the decisions of the network could be associated with the three selected regions in 71% of cases. CONCLUSIONS: Our study is an important step toward better understanding of deep learning models developed for breast mass diagnosis. We demonstrated that the decisions made by the network can be related to the appearance of certain tissue regions in breast mass US images. |
format | Online Article Text |
id | pubmed-9231514 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Sciendo |
record_format | MEDLINE/PubMed |
spelling | pubmed-92315142022-07-08 Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps Byra, Michał Dobruch-Sobczak, Katarzyna Piotrzkowska-Wroblewska, Hanna Klimonda, Ziemowit Litniewski, Jerzy J Ultrason Research Paper AIM OF THE STUDY: Deep neural networks have achieved good performance in breast mass classification in ultrasound imaging. However, their usage in clinical practice is still limited due to the lack of explainability of decisions conducted by the networks. In this study, to address the explainability problem, we generated saliency maps indicating ultrasound image regions important for the network’s classification decisions. MATERIAL AND METHODS: Ultrasound images were collected from 272 breast masses, including 123 malignant and 149 benign. Transfer learning was applied to develop a deep network for breast mass classification. Next, the class activation mapping technique was used to generate saliency maps for each image. Breast mass images were divided into three regions: the breast mass region, the peritumoral region surrounding the breast mass, and the region below the breast mass. The pointing game metric was used to quantitatively assess the overlap between the saliency maps and the three selected US image regions. RESULTS: Deep learning classifier achieved the area under the receiver operating characteristic curve, accuracy, sensitivity, and specificity of 0.887, 0.835, 0.801, and 0.868, respectively. In the case of the correctly classified test US images, analysis of the saliency maps revealed that the decisions of the network could be associated with the three selected regions in 71% of cases. CONCLUSIONS: Our study is an important step toward better understanding of deep learning models developed for breast mass diagnosis. We demonstrated that the decisions made by the network can be related to the appearance of certain tissue regions in breast mass US images. Sciendo 2022-04-27 /pmc/articles/PMC9231514/ /pubmed/35811586 http://dx.doi.org/10.15557/JoU.2022.0013 Text en © 2022 Michał Byra, Katarzyna Dobruch-Sobczak, Hanna Piotrzkowska-Wroblewska, Ziemowit Klimonda, Jerzy Litniewski, published by Sciendo https://creativecommons.org/licenses/by-nc-nd/3.0/This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License. |
spellingShingle | Research Paper Byra, Michał Dobruch-Sobczak, Katarzyna Piotrzkowska-Wroblewska, Hanna Klimonda, Ziemowit Litniewski, Jerzy Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps |
title | Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps |
title_full | Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps |
title_fullStr | Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps |
title_full_unstemmed | Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps |
title_short | Explaining a Deep Learning Based Breast Ultrasound Image Classifier with Saliency Maps |
title_sort | explaining a deep learning based breast ultrasound image classifier with saliency maps |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9231514/ https://www.ncbi.nlm.nih.gov/pubmed/35811586 http://dx.doi.org/10.15557/JoU.2022.0013 |
work_keys_str_mv | AT byramichał explainingadeeplearningbasedbreastultrasoundimageclassifierwithsaliencymaps AT dobruchsobczakkatarzyna explainingadeeplearningbasedbreastultrasoundimageclassifierwithsaliencymaps AT piotrzkowskawroblewskahanna explainingadeeplearningbasedbreastultrasoundimageclassifierwithsaliencymaps AT klimondaziemowit explainingadeeplearningbasedbreastultrasoundimageclassifierwithsaliencymaps AT litniewskijerzy explainingadeeplearningbasedbreastultrasoundimageclassifierwithsaliencymaps |