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Molecular Docking Approach of Bryophyllum Pinnatum Compounds as Atherosclerosis Therapy By Targeting Adenosine Monophosphate-Activated Protein Kinase and Inducible Nitric Oxide Synthase

BACKGROUND: Bryophyllum pinnatum is a herbal medicine from Indonesia which has an anti-inflammatory effect. Adenosine monophosphate-activated protein kinase (AMPK) and inducible nitric oxide synthase (iNOS) play a function in thickening and inflammation in atherosclerosis disease. OBJECTIVE: This re...

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Autores principales: Yuniwati, Yuyun, Syaban, Mokhamad Fahmi Rizki, Anoraga, Salsabila Ghina, Sabila, Faradilah Lukmana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Academy of Medical sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9233472/
https://www.ncbi.nlm.nih.gov/pubmed/35774835
http://dx.doi.org/10.5455/aim.2022.30.91-95
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author Yuniwati, Yuyun
Syaban, Mokhamad Fahmi Rizki
Anoraga, Salsabila Ghina
Sabila, Faradilah Lukmana
author_facet Yuniwati, Yuyun
Syaban, Mokhamad Fahmi Rizki
Anoraga, Salsabila Ghina
Sabila, Faradilah Lukmana
author_sort Yuniwati, Yuyun
collection PubMed
description BACKGROUND: Bryophyllum pinnatum is a herbal medicine from Indonesia which has an anti-inflammatory effect. Adenosine monophosphate-activated protein kinase (AMPK) and inducible nitric oxide synthase (iNOS) play a function in thickening and inflammation in atherosclerosis disease. OBJECTIVE: This research aims conducted to know the potential of Bryophyllum pinnatum as a therapy for atherosclerosis by targeting AMPK and iNOS. METHODS: We employed a molecular docking technique to interact active compounds of Bryohyllum pinnatum with AMPK and iNOS, which were retrieved on the protein databank. Molecular docking analysis utilizing tools such as Pyrx 9.5, Pymol, and Discovery Studio, to support the interaction between the compound and protein. Molecular Dynamic (MD) simulation also performed using CABS-FLEX 2.0 server to know the stability interaction. RESULTS: Bryophillin B was an active compound that possesses significant binding to AMPK and iNOS. It had same binding pocket as native ligand, and Bryophyllin B has a stronger interaction with AMPK. Based on the RMSF, the interaction biding complex Bryophyllin B with AMPK and iNOS were stable CONCLUSION: Bryophillin B was predicted to have potential therapy for atherosclerosis disease.
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spelling pubmed-92334722022-06-29 Molecular Docking Approach of Bryophyllum Pinnatum Compounds as Atherosclerosis Therapy By Targeting Adenosine Monophosphate-Activated Protein Kinase and Inducible Nitric Oxide Synthase Yuniwati, Yuyun Syaban, Mokhamad Fahmi Rizki Anoraga, Salsabila Ghina Sabila, Faradilah Lukmana Acta Inform Med Original Paper BACKGROUND: Bryophyllum pinnatum is a herbal medicine from Indonesia which has an anti-inflammatory effect. Adenosine monophosphate-activated protein kinase (AMPK) and inducible nitric oxide synthase (iNOS) play a function in thickening and inflammation in atherosclerosis disease. OBJECTIVE: This research aims conducted to know the potential of Bryophyllum pinnatum as a therapy for atherosclerosis by targeting AMPK and iNOS. METHODS: We employed a molecular docking technique to interact active compounds of Bryohyllum pinnatum with AMPK and iNOS, which were retrieved on the protein databank. Molecular docking analysis utilizing tools such as Pyrx 9.5, Pymol, and Discovery Studio, to support the interaction between the compound and protein. Molecular Dynamic (MD) simulation also performed using CABS-FLEX 2.0 server to know the stability interaction. RESULTS: Bryophillin B was an active compound that possesses significant binding to AMPK and iNOS. It had same binding pocket as native ligand, and Bryophyllin B has a stronger interaction with AMPK. Based on the RMSF, the interaction biding complex Bryophyllin B with AMPK and iNOS were stable CONCLUSION: Bryophillin B was predicted to have potential therapy for atherosclerosis disease. Academy of Medical sciences 2022-06 /pmc/articles/PMC9233472/ /pubmed/35774835 http://dx.doi.org/10.5455/aim.2022.30.91-95 Text en © 2022 Yuyun Yuniwati, Mokhamad Fahmi Rizki Syaban, Salsabila Ghina Anoraga, Faradilah Lukmana Sabila https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Paper
Yuniwati, Yuyun
Syaban, Mokhamad Fahmi Rizki
Anoraga, Salsabila Ghina
Sabila, Faradilah Lukmana
Molecular Docking Approach of Bryophyllum Pinnatum Compounds as Atherosclerosis Therapy By Targeting Adenosine Monophosphate-Activated Protein Kinase and Inducible Nitric Oxide Synthase
title Molecular Docking Approach of Bryophyllum Pinnatum Compounds as Atherosclerosis Therapy By Targeting Adenosine Monophosphate-Activated Protein Kinase and Inducible Nitric Oxide Synthase
title_full Molecular Docking Approach of Bryophyllum Pinnatum Compounds as Atherosclerosis Therapy By Targeting Adenosine Monophosphate-Activated Protein Kinase and Inducible Nitric Oxide Synthase
title_fullStr Molecular Docking Approach of Bryophyllum Pinnatum Compounds as Atherosclerosis Therapy By Targeting Adenosine Monophosphate-Activated Protein Kinase and Inducible Nitric Oxide Synthase
title_full_unstemmed Molecular Docking Approach of Bryophyllum Pinnatum Compounds as Atherosclerosis Therapy By Targeting Adenosine Monophosphate-Activated Protein Kinase and Inducible Nitric Oxide Synthase
title_short Molecular Docking Approach of Bryophyllum Pinnatum Compounds as Atherosclerosis Therapy By Targeting Adenosine Monophosphate-Activated Protein Kinase and Inducible Nitric Oxide Synthase
title_sort molecular docking approach of bryophyllum pinnatum compounds as atherosclerosis therapy by targeting adenosine monophosphate-activated protein kinase and inducible nitric oxide synthase
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9233472/
https://www.ncbi.nlm.nih.gov/pubmed/35774835
http://dx.doi.org/10.5455/aim.2022.30.91-95
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