Cargando…

Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer

Several studies have found that pathological imbalance of alterative splicing (AS) events is associated with cancer susceptibility. carcinogenicity. Nevertheless, the relationship between heritable variation in AS events and carcinogenicity has not been extensively explored. Here, we downloaded AS e...

Descripción completa

Detalles Bibliográficos
Autores principales: Ye, Fangdie, Liang, Yingchun, Cheng, Zhang, Liu, Yufei, Hu, Jimeng, Li, Weijian, Chen, Xinan, Gao, Jiahao, Jiang, Haowen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9234272/
https://www.ncbi.nlm.nih.gov/pubmed/35769470
http://dx.doi.org/10.3389/fimmu.2022.911902
_version_ 1784736031794266112
author Ye, Fangdie
Liang, Yingchun
Cheng, Zhang
Liu, Yufei
Hu, Jimeng
Li, Weijian
Chen, Xinan
Gao, Jiahao
Jiang, Haowen
author_facet Ye, Fangdie
Liang, Yingchun
Cheng, Zhang
Liu, Yufei
Hu, Jimeng
Li, Weijian
Chen, Xinan
Gao, Jiahao
Jiang, Haowen
author_sort Ye, Fangdie
collection PubMed
description Several studies have found that pathological imbalance of alterative splicing (AS) events is associated with cancer susceptibility. carcinogenicity. Nevertheless, the relationship between heritable variation in AS events and carcinogenicity has not been extensively explored. Here, we downloaded AS event signatures, transcriptome profiles, and matched clinical information from The Cancer Genome Atlas (TCGA) database, identified the prognostic AS-related events via conducting the univariate Cox regression algorism. Subsequently, the prognostic AS-related events were further reduced by the least absolute shrinkage and selection operator (LASSO) logistic regression model, and employed for constructing the risk model. Single-sample (ssGSEA), ESTIMATE, and the CIBERSORT algorithms were conducted to evaluate tumor microenvironment status. CCK8, cell culture scratch, transwell invasion assays and flow cytometry were conducted to confirm the reliability of the model. We found 2751 prognostic-related AS events, and constructed a risk model with seven prognostic-related AS events. Compared with high-risk score patients, the overall survival rate of the patients with low-risk score was remarkably longer. Besides, we further found that risk score was also closely related to alterations in immune cell infiltration and immunotherapeutic molecules, indicating its potential as an observation of immune infiltration and clinical response to immunotherapy. In addition, the downstream target gene (DYM) could be a promising prognostic factor for bladder cancer. Our investigation provided an indispensable reference for ulteriorly exploring the role of AS events in the tumor microenvironment and immunotherapy efficiency, and rendered personalized prognosis monitoring for bladder cancer.
format Online
Article
Text
id pubmed-9234272
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-92342722022-06-28 Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer Ye, Fangdie Liang, Yingchun Cheng, Zhang Liu, Yufei Hu, Jimeng Li, Weijian Chen, Xinan Gao, Jiahao Jiang, Haowen Front Immunol Immunology Several studies have found that pathological imbalance of alterative splicing (AS) events is associated with cancer susceptibility. carcinogenicity. Nevertheless, the relationship between heritable variation in AS events and carcinogenicity has not been extensively explored. Here, we downloaded AS event signatures, transcriptome profiles, and matched clinical information from The Cancer Genome Atlas (TCGA) database, identified the prognostic AS-related events via conducting the univariate Cox regression algorism. Subsequently, the prognostic AS-related events were further reduced by the least absolute shrinkage and selection operator (LASSO) logistic regression model, and employed for constructing the risk model. Single-sample (ssGSEA), ESTIMATE, and the CIBERSORT algorithms were conducted to evaluate tumor microenvironment status. CCK8, cell culture scratch, transwell invasion assays and flow cytometry were conducted to confirm the reliability of the model. We found 2751 prognostic-related AS events, and constructed a risk model with seven prognostic-related AS events. Compared with high-risk score patients, the overall survival rate of the patients with low-risk score was remarkably longer. Besides, we further found that risk score was also closely related to alterations in immune cell infiltration and immunotherapeutic molecules, indicating its potential as an observation of immune infiltration and clinical response to immunotherapy. In addition, the downstream target gene (DYM) could be a promising prognostic factor for bladder cancer. Our investigation provided an indispensable reference for ulteriorly exploring the role of AS events in the tumor microenvironment and immunotherapy efficiency, and rendered personalized prognosis monitoring for bladder cancer. Frontiers Media S.A. 2022-06-13 /pmc/articles/PMC9234272/ /pubmed/35769470 http://dx.doi.org/10.3389/fimmu.2022.911902 Text en Copyright © 2022 Ye, Liang, Cheng, Liu, Hu, Li, Chen, Gao and Jiang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Ye, Fangdie
Liang, Yingchun
Cheng, Zhang
Liu, Yufei
Hu, Jimeng
Li, Weijian
Chen, Xinan
Gao, Jiahao
Jiang, Haowen
Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer
title Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer
title_full Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer
title_fullStr Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer
title_full_unstemmed Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer
title_short Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer
title_sort immunological characteristics of alternative splicing profiles related to prognosis in bladder cancer
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9234272/
https://www.ncbi.nlm.nih.gov/pubmed/35769470
http://dx.doi.org/10.3389/fimmu.2022.911902
work_keys_str_mv AT yefangdie immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer
AT liangyingchun immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer
AT chengzhang immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer
AT liuyufei immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer
AT hujimeng immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer
AT liweijian immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer
AT chenxinan immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer
AT gaojiahao immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer
AT jianghaowen immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer