Cargando…
Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer
Several studies have found that pathological imbalance of alterative splicing (AS) events is associated with cancer susceptibility. carcinogenicity. Nevertheless, the relationship between heritable variation in AS events and carcinogenicity has not been extensively explored. Here, we downloaded AS e...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9234272/ https://www.ncbi.nlm.nih.gov/pubmed/35769470 http://dx.doi.org/10.3389/fimmu.2022.911902 |
_version_ | 1784736031794266112 |
---|---|
author | Ye, Fangdie Liang, Yingchun Cheng, Zhang Liu, Yufei Hu, Jimeng Li, Weijian Chen, Xinan Gao, Jiahao Jiang, Haowen |
author_facet | Ye, Fangdie Liang, Yingchun Cheng, Zhang Liu, Yufei Hu, Jimeng Li, Weijian Chen, Xinan Gao, Jiahao Jiang, Haowen |
author_sort | Ye, Fangdie |
collection | PubMed |
description | Several studies have found that pathological imbalance of alterative splicing (AS) events is associated with cancer susceptibility. carcinogenicity. Nevertheless, the relationship between heritable variation in AS events and carcinogenicity has not been extensively explored. Here, we downloaded AS event signatures, transcriptome profiles, and matched clinical information from The Cancer Genome Atlas (TCGA) database, identified the prognostic AS-related events via conducting the univariate Cox regression algorism. Subsequently, the prognostic AS-related events were further reduced by the least absolute shrinkage and selection operator (LASSO) logistic regression model, and employed for constructing the risk model. Single-sample (ssGSEA), ESTIMATE, and the CIBERSORT algorithms were conducted to evaluate tumor microenvironment status. CCK8, cell culture scratch, transwell invasion assays and flow cytometry were conducted to confirm the reliability of the model. We found 2751 prognostic-related AS events, and constructed a risk model with seven prognostic-related AS events. Compared with high-risk score patients, the overall survival rate of the patients with low-risk score was remarkably longer. Besides, we further found that risk score was also closely related to alterations in immune cell infiltration and immunotherapeutic molecules, indicating its potential as an observation of immune infiltration and clinical response to immunotherapy. In addition, the downstream target gene (DYM) could be a promising prognostic factor for bladder cancer. Our investigation provided an indispensable reference for ulteriorly exploring the role of AS events in the tumor microenvironment and immunotherapy efficiency, and rendered personalized prognosis monitoring for bladder cancer. |
format | Online Article Text |
id | pubmed-9234272 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92342722022-06-28 Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer Ye, Fangdie Liang, Yingchun Cheng, Zhang Liu, Yufei Hu, Jimeng Li, Weijian Chen, Xinan Gao, Jiahao Jiang, Haowen Front Immunol Immunology Several studies have found that pathological imbalance of alterative splicing (AS) events is associated with cancer susceptibility. carcinogenicity. Nevertheless, the relationship between heritable variation in AS events and carcinogenicity has not been extensively explored. Here, we downloaded AS event signatures, transcriptome profiles, and matched clinical information from The Cancer Genome Atlas (TCGA) database, identified the prognostic AS-related events via conducting the univariate Cox regression algorism. Subsequently, the prognostic AS-related events were further reduced by the least absolute shrinkage and selection operator (LASSO) logistic regression model, and employed for constructing the risk model. Single-sample (ssGSEA), ESTIMATE, and the CIBERSORT algorithms were conducted to evaluate tumor microenvironment status. CCK8, cell culture scratch, transwell invasion assays and flow cytometry were conducted to confirm the reliability of the model. We found 2751 prognostic-related AS events, and constructed a risk model with seven prognostic-related AS events. Compared with high-risk score patients, the overall survival rate of the patients with low-risk score was remarkably longer. Besides, we further found that risk score was also closely related to alterations in immune cell infiltration and immunotherapeutic molecules, indicating its potential as an observation of immune infiltration and clinical response to immunotherapy. In addition, the downstream target gene (DYM) could be a promising prognostic factor for bladder cancer. Our investigation provided an indispensable reference for ulteriorly exploring the role of AS events in the tumor microenvironment and immunotherapy efficiency, and rendered personalized prognosis monitoring for bladder cancer. Frontiers Media S.A. 2022-06-13 /pmc/articles/PMC9234272/ /pubmed/35769470 http://dx.doi.org/10.3389/fimmu.2022.911902 Text en Copyright © 2022 Ye, Liang, Cheng, Liu, Hu, Li, Chen, Gao and Jiang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Ye, Fangdie Liang, Yingchun Cheng, Zhang Liu, Yufei Hu, Jimeng Li, Weijian Chen, Xinan Gao, Jiahao Jiang, Haowen Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer |
title | Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer |
title_full | Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer |
title_fullStr | Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer |
title_full_unstemmed | Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer |
title_short | Immunological Characteristics of Alternative Splicing Profiles Related to Prognosis in Bladder Cancer |
title_sort | immunological characteristics of alternative splicing profiles related to prognosis in bladder cancer |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9234272/ https://www.ncbi.nlm.nih.gov/pubmed/35769470 http://dx.doi.org/10.3389/fimmu.2022.911902 |
work_keys_str_mv | AT yefangdie immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer AT liangyingchun immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer AT chengzhang immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer AT liuyufei immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer AT hujimeng immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer AT liweijian immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer AT chenxinan immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer AT gaojiahao immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer AT jianghaowen immunologicalcharacteristicsofalternativesplicingprofilesrelatedtoprognosisinbladdercancer |