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Genome sequences of 38 Fusarium oxysporum strains
OBJECTIVE: Wilt caused by Fusarium oxysporum f. sp. melonis (Fom) is one of the most widespread and destructive melon diseases worldwide. Whole-genome sequencing data of a diverse set of Fom strains, as well as several non-pathogenic strains isolated from melon from different parts of the world are...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9235281/ https://www.ncbi.nlm.nih.gov/pubmed/35761299 http://dx.doi.org/10.1186/s13104-022-06112-1 |
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author | Sabahi, Fatemeh Banihashemi, Zia de Sain, Mara Rep, Martijn |
author_facet | Sabahi, Fatemeh Banihashemi, Zia de Sain, Mara Rep, Martijn |
author_sort | Sabahi, Fatemeh |
collection | PubMed |
description | OBJECTIVE: Wilt caused by Fusarium oxysporum f. sp. melonis (Fom) is one of the most widespread and destructive melon diseases worldwide. Whole-genome sequencing data of a diverse set of Fom strains, as well as several non-pathogenic strains isolated from melon from different parts of the world are described here. These data shed light on the genetic diversity, population structure and the potential evolutionary trajectories which have led to the emergence of different Fom races, and will facilitate identification of avirulence genes which will be helpful to develop resistant melon cultivars. DATA DESCRIPTION: Genomic DNA was extracted from mycelium of 38 Fusarium oxysporum (Fo) strains collected from different parts of the world including Belgium, China, France, Iran, Israel, Japan, Mexico, New Zealand, Spain, the Netherlands, and the United States. The genomes were sequenced to ≈ 20 × coverage using the Illumina Hiseq Xten system, resulting in paired-end reads of 151 bp and assemblies of 1675 (Fom-18L) to 4472 (Fom-R12-13) scaffolds. The genome sequences are available in the National Center for Biotechnology Information (NCBI) and the Sequence Read Archive (SRA) under Project number PRJNA596396 and PRJNA596396, respectively. The presented data set can be useful to identify the genes associated with pathogenic strategies. |
format | Online Article Text |
id | pubmed-9235281 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-92352812022-06-28 Genome sequences of 38 Fusarium oxysporum strains Sabahi, Fatemeh Banihashemi, Zia de Sain, Mara Rep, Martijn BMC Res Notes Data Note OBJECTIVE: Wilt caused by Fusarium oxysporum f. sp. melonis (Fom) is one of the most widespread and destructive melon diseases worldwide. Whole-genome sequencing data of a diverse set of Fom strains, as well as several non-pathogenic strains isolated from melon from different parts of the world are described here. These data shed light on the genetic diversity, population structure and the potential evolutionary trajectories which have led to the emergence of different Fom races, and will facilitate identification of avirulence genes which will be helpful to develop resistant melon cultivars. DATA DESCRIPTION: Genomic DNA was extracted from mycelium of 38 Fusarium oxysporum (Fo) strains collected from different parts of the world including Belgium, China, France, Iran, Israel, Japan, Mexico, New Zealand, Spain, the Netherlands, and the United States. The genomes were sequenced to ≈ 20 × coverage using the Illumina Hiseq Xten system, resulting in paired-end reads of 151 bp and assemblies of 1675 (Fom-18L) to 4472 (Fom-R12-13) scaffolds. The genome sequences are available in the National Center for Biotechnology Information (NCBI) and the Sequence Read Archive (SRA) under Project number PRJNA596396 and PRJNA596396, respectively. The presented data set can be useful to identify the genes associated with pathogenic strategies. BioMed Central 2022-06-27 /pmc/articles/PMC9235281/ /pubmed/35761299 http://dx.doi.org/10.1186/s13104-022-06112-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Data Note Sabahi, Fatemeh Banihashemi, Zia de Sain, Mara Rep, Martijn Genome sequences of 38 Fusarium oxysporum strains |
title | Genome sequences of 38 Fusarium oxysporum strains |
title_full | Genome sequences of 38 Fusarium oxysporum strains |
title_fullStr | Genome sequences of 38 Fusarium oxysporum strains |
title_full_unstemmed | Genome sequences of 38 Fusarium oxysporum strains |
title_short | Genome sequences of 38 Fusarium oxysporum strains |
title_sort | genome sequences of 38 fusarium oxysporum strains |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9235281/ https://www.ncbi.nlm.nih.gov/pubmed/35761299 http://dx.doi.org/10.1186/s13104-022-06112-1 |
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