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Identification and Validation of a Five-Gene Diagnostic Signature for Preeclampsia
Preeclampsia is the leading cause of morbidity and mortality for mothers and newborns worldwide. Despite extensive efforts made to understand the underlying pathology of preeclampsia, there is still no clinically useful effective tool for the early diagnosis of preeclampsia. In this study, we conduc...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9237423/ https://www.ncbi.nlm.nih.gov/pubmed/35774506 http://dx.doi.org/10.3389/fgene.2022.910556 |
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author | Liu, Yu Lu, Xiumin Zhang, Yuhong Liu, Meimei |
author_facet | Liu, Yu Lu, Xiumin Zhang, Yuhong Liu, Meimei |
author_sort | Liu, Yu |
collection | PubMed |
description | Preeclampsia is the leading cause of morbidity and mortality for mothers and newborns worldwide. Despite extensive efforts made to understand the underlying pathology of preeclampsia, there is still no clinically useful effective tool for the early diagnosis of preeclampsia. In this study, we conducted a retrospectively multicenter discover-validation study to develop and validate a novel biomarker for preeclampsia diagnosis. We identified 38 differentially expressed genes (DEGs) involved in preeclampsia in a case-control study by analyzing expression profiles in the discovery cohort. We developed a 5-mRNA signature (termed PE5-signature) to diagnose preeclampsia from 38 DEGs using recursive feature elimination with a random forest supervised classification algorithm, including ENG, KRT80, CEBPA, RDH13 and WASH9P. The PE5-signature showed high accuracy in discriminating preeclampsia from controls with a receiver operating characteristic area under the curve value (AUC) of 0.971, a sensitivity of 0.842 and a specificity of 0.950. The PE5-signature was then validated in an independent case-control study and achieved a reliable and robust predictive performance with an AUC of 0.929, a sensitivity of 0.696, and a specificity of 0.946. In summary, we have developed and validated a five-mRNA biomarker panel as a risk assessment tool to assist in the detection of preeclampsia. This gene panel has potential clinical value for early preeclampsia diagnosis and may help us better understand the precise mechanisms involved. |
format | Online Article Text |
id | pubmed-9237423 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92374232022-06-29 Identification and Validation of a Five-Gene Diagnostic Signature for Preeclampsia Liu, Yu Lu, Xiumin Zhang, Yuhong Liu, Meimei Front Genet Genetics Preeclampsia is the leading cause of morbidity and mortality for mothers and newborns worldwide. Despite extensive efforts made to understand the underlying pathology of preeclampsia, there is still no clinically useful effective tool for the early diagnosis of preeclampsia. In this study, we conducted a retrospectively multicenter discover-validation study to develop and validate a novel biomarker for preeclampsia diagnosis. We identified 38 differentially expressed genes (DEGs) involved in preeclampsia in a case-control study by analyzing expression profiles in the discovery cohort. We developed a 5-mRNA signature (termed PE5-signature) to diagnose preeclampsia from 38 DEGs using recursive feature elimination with a random forest supervised classification algorithm, including ENG, KRT80, CEBPA, RDH13 and WASH9P. The PE5-signature showed high accuracy in discriminating preeclampsia from controls with a receiver operating characteristic area under the curve value (AUC) of 0.971, a sensitivity of 0.842 and a specificity of 0.950. The PE5-signature was then validated in an independent case-control study and achieved a reliable and robust predictive performance with an AUC of 0.929, a sensitivity of 0.696, and a specificity of 0.946. In summary, we have developed and validated a five-mRNA biomarker panel as a risk assessment tool to assist in the detection of preeclampsia. This gene panel has potential clinical value for early preeclampsia diagnosis and may help us better understand the precise mechanisms involved. Frontiers Media S.A. 2022-06-14 /pmc/articles/PMC9237423/ /pubmed/35774506 http://dx.doi.org/10.3389/fgene.2022.910556 Text en Copyright © 2022 Liu, Lu, Zhang and Liu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Liu, Yu Lu, Xiumin Zhang, Yuhong Liu, Meimei Identification and Validation of a Five-Gene Diagnostic Signature for Preeclampsia |
title | Identification and Validation of a Five-Gene Diagnostic Signature for Preeclampsia |
title_full | Identification and Validation of a Five-Gene Diagnostic Signature for Preeclampsia |
title_fullStr | Identification and Validation of a Five-Gene Diagnostic Signature for Preeclampsia |
title_full_unstemmed | Identification and Validation of a Five-Gene Diagnostic Signature for Preeclampsia |
title_short | Identification and Validation of a Five-Gene Diagnostic Signature for Preeclampsia |
title_sort | identification and validation of a five-gene diagnostic signature for preeclampsia |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9237423/ https://www.ncbi.nlm.nih.gov/pubmed/35774506 http://dx.doi.org/10.3389/fgene.2022.910556 |
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