Cargando…

A theory-based practical solution to correct for sex-differential participation bias

Most genomic cohorts are retrospective where the exposures and outcomes are predetermined prior to sample collection. Therefore, a spurious association between an exposure and an outcome can arise if both variables affect study participation. Such concerns were raised in previous studies questioning...

Descripción completa

Detalles Bibliográficos
Autores principales: Lee, Hanbin, Han, Buhm
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9238114/
https://www.ncbi.nlm.nih.gov/pubmed/35761388
http://dx.doi.org/10.1186/s13059-022-02703-0
_version_ 1784736958030807040
author Lee, Hanbin
Han, Buhm
author_facet Lee, Hanbin
Han, Buhm
author_sort Lee, Hanbin
collection PubMed
description Most genomic cohorts are retrospective where the exposures and outcomes are predetermined prior to sample collection. Therefore, a spurious association between an exposure and an outcome can arise if both variables affect study participation. Such concerns were raised in previous studies questioning the representativeness of the UK Biobank. Recently, a genome-wide association study (GWAS) on biological sex found many autosomal hits and non-negligible autosomal heritability which the authors attribute to selection bias. In this study, we propose a simple and a practical method that can overcome sex-driven selection bias based on theoretical analysis and simulations. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13059-022-02703-0.
format Online
Article
Text
id pubmed-9238114
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-92381142022-06-29 A theory-based practical solution to correct for sex-differential participation bias Lee, Hanbin Han, Buhm Genome Biol Short Report Most genomic cohorts are retrospective where the exposures and outcomes are predetermined prior to sample collection. Therefore, a spurious association between an exposure and an outcome can arise if both variables affect study participation. Such concerns were raised in previous studies questioning the representativeness of the UK Biobank. Recently, a genome-wide association study (GWAS) on biological sex found many autosomal hits and non-negligible autosomal heritability which the authors attribute to selection bias. In this study, we propose a simple and a practical method that can overcome sex-driven selection bias based on theoretical analysis and simulations. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13059-022-02703-0. BioMed Central 2022-06-27 /pmc/articles/PMC9238114/ /pubmed/35761388 http://dx.doi.org/10.1186/s13059-022-02703-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Short Report
Lee, Hanbin
Han, Buhm
A theory-based practical solution to correct for sex-differential participation bias
title A theory-based practical solution to correct for sex-differential participation bias
title_full A theory-based practical solution to correct for sex-differential participation bias
title_fullStr A theory-based practical solution to correct for sex-differential participation bias
title_full_unstemmed A theory-based practical solution to correct for sex-differential participation bias
title_short A theory-based practical solution to correct for sex-differential participation bias
title_sort theory-based practical solution to correct for sex-differential participation bias
topic Short Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9238114/
https://www.ncbi.nlm.nih.gov/pubmed/35761388
http://dx.doi.org/10.1186/s13059-022-02703-0
work_keys_str_mv AT leehanbin atheorybasedpracticalsolutiontocorrectforsexdifferentialparticipationbias
AT hanbuhm atheorybasedpracticalsolutiontocorrectforsexdifferentialparticipationbias
AT leehanbin theorybasedpracticalsolutiontocorrectforsexdifferentialparticipationbias
AT hanbuhm theorybasedpracticalsolutiontocorrectforsexdifferentialparticipationbias