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Harmonizing Prokaryotic Nomenclature: Fixing the Fuss over Phylum Name Flipping

Lloyd and Tahon recently criticized proposed bacterial phylum nomenclature changes (K.G. Lloyd, G. Tahon, Nat Rev Microbiol 20:123-124, 2022, https://doi.org/10.1038/s41579-022-00684-2) precipitated by the International Committee on Systematics of Prokaryotes (ICSP)’s official recognition of phylum...

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Autores principales: Panda, Adyasha, Islam, Salim T., Sharma, Gaurav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9239268/
https://www.ncbi.nlm.nih.gov/pubmed/35536003
http://dx.doi.org/10.1128/mbio.00970-22
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author Panda, Adyasha
Islam, Salim T.
Sharma, Gaurav
author_facet Panda, Adyasha
Islam, Salim T.
Sharma, Gaurav
author_sort Panda, Adyasha
collection PubMed
description Lloyd and Tahon recently criticized proposed bacterial phylum nomenclature changes (K.G. Lloyd, G. Tahon, Nat Rev Microbiol 20:123-124, 2022, https://doi.org/10.1038/s41579-022-00684-2) precipitated by the International Committee on Systematics of Prokaryotes (ICSP)’s official recognition of phylum nomenclature rules. Here, we extend the critique. While we applaud bringing consistency to phylum names, we prognosticate what this minute but momentous change entails for the future of microbial nomenclature and how this will sow confusion among researchers. Several pitfalls of the proposed ICSP framework-based nomenclature are also detailed, including (i) improper type genus name and suffix usage, (ii) loss of Bacteria/Archaea distinctions, (iii) disruption of major phylum name prefixes, and (iv) absence of organism name prevalidation. Finally, we suggest new names for the key bacterial phyla Proteobacteria (Proteobacteriota), Firmicutes (Firmicuteota), Actinobacteria (Actinobacteriota), and Tenericutes (Tenericuteota), while keeping the archaeal phylum names Crenarchaeota, Thaumarchaeota, and Euryarchaeota. Together, these changes will help researchers attain chaos-free uniform nomenclature.
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spelling pubmed-92392682022-06-29 Harmonizing Prokaryotic Nomenclature: Fixing the Fuss over Phylum Name Flipping Panda, Adyasha Islam, Salim T. Sharma, Gaurav mBio Opinion/Hypothesis Lloyd and Tahon recently criticized proposed bacterial phylum nomenclature changes (K.G. Lloyd, G. Tahon, Nat Rev Microbiol 20:123-124, 2022, https://doi.org/10.1038/s41579-022-00684-2) precipitated by the International Committee on Systematics of Prokaryotes (ICSP)’s official recognition of phylum nomenclature rules. Here, we extend the critique. While we applaud bringing consistency to phylum names, we prognosticate what this minute but momentous change entails for the future of microbial nomenclature and how this will sow confusion among researchers. Several pitfalls of the proposed ICSP framework-based nomenclature are also detailed, including (i) improper type genus name and suffix usage, (ii) loss of Bacteria/Archaea distinctions, (iii) disruption of major phylum name prefixes, and (iv) absence of organism name prevalidation. Finally, we suggest new names for the key bacterial phyla Proteobacteria (Proteobacteriota), Firmicutes (Firmicuteota), Actinobacteria (Actinobacteriota), and Tenericutes (Tenericuteota), while keeping the archaeal phylum names Crenarchaeota, Thaumarchaeota, and Euryarchaeota. Together, these changes will help researchers attain chaos-free uniform nomenclature. American Society for Microbiology 2022-05-10 /pmc/articles/PMC9239268/ /pubmed/35536003 http://dx.doi.org/10.1128/mbio.00970-22 Text en Copyright © 2022 Panda et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Opinion/Hypothesis
Panda, Adyasha
Islam, Salim T.
Sharma, Gaurav
Harmonizing Prokaryotic Nomenclature: Fixing the Fuss over Phylum Name Flipping
title Harmonizing Prokaryotic Nomenclature: Fixing the Fuss over Phylum Name Flipping
title_full Harmonizing Prokaryotic Nomenclature: Fixing the Fuss over Phylum Name Flipping
title_fullStr Harmonizing Prokaryotic Nomenclature: Fixing the Fuss over Phylum Name Flipping
title_full_unstemmed Harmonizing Prokaryotic Nomenclature: Fixing the Fuss over Phylum Name Flipping
title_short Harmonizing Prokaryotic Nomenclature: Fixing the Fuss over Phylum Name Flipping
title_sort harmonizing prokaryotic nomenclature: fixing the fuss over phylum name flipping
topic Opinion/Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9239268/
https://www.ncbi.nlm.nih.gov/pubmed/35536003
http://dx.doi.org/10.1128/mbio.00970-22
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