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Robotic search for optimal cell culture in regenerative medicine

Induced differentiation is one of the most experience- and skill-dependent experimental processes in regenerative medicine, and establishing optimal conditions often takes years. We developed a robotic AI system with a batch Bayesian optimization algorithm that autonomously induces the differentiati...

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Autores principales: Kanda, Genki N, Tsuzuki, Taku, Terada, Motoki, Sakai, Noriko, Motozawa, Naohiro, Masuda, Tomohiro, Nishida, Mitsuhiro, Watanabe, Chihaya T, Higashi, Tatsuki, Horiguchi, Shuhei A, Kudo, Taku, Kamei, Motohisa, Sunagawa, Genshiro A, Matsukuma, Kenji, Sakurada, Takeshi, Ozawa, Yosuke, Takahashi, Masayo, Takahashi, Koichi, Natsume, Tohru
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9239686/
https://www.ncbi.nlm.nih.gov/pubmed/35762203
http://dx.doi.org/10.7554/eLife.77007
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author Kanda, Genki N
Tsuzuki, Taku
Terada, Motoki
Sakai, Noriko
Motozawa, Naohiro
Masuda, Tomohiro
Nishida, Mitsuhiro
Watanabe, Chihaya T
Higashi, Tatsuki
Horiguchi, Shuhei A
Kudo, Taku
Kamei, Motohisa
Sunagawa, Genshiro A
Matsukuma, Kenji
Sakurada, Takeshi
Ozawa, Yosuke
Takahashi, Masayo
Takahashi, Koichi
Natsume, Tohru
author_facet Kanda, Genki N
Tsuzuki, Taku
Terada, Motoki
Sakai, Noriko
Motozawa, Naohiro
Masuda, Tomohiro
Nishida, Mitsuhiro
Watanabe, Chihaya T
Higashi, Tatsuki
Horiguchi, Shuhei A
Kudo, Taku
Kamei, Motohisa
Sunagawa, Genshiro A
Matsukuma, Kenji
Sakurada, Takeshi
Ozawa, Yosuke
Takahashi, Masayo
Takahashi, Koichi
Natsume, Tohru
author_sort Kanda, Genki N
collection PubMed
description Induced differentiation is one of the most experience- and skill-dependent experimental processes in regenerative medicine, and establishing optimal conditions often takes years. We developed a robotic AI system with a batch Bayesian optimization algorithm that autonomously induces the differentiation of induced pluripotent stem cell-derived retinal pigment epithelial (iPSC-RPE) cells. From 200 million possible parameter combinations, the system performed cell culture in 143 different conditions in 111 days, resulting in 88% better iPSC-RPE production than that obtained by the pre-optimized culture in terms of the pigmentation scores. Our work demonstrates that the use of autonomous robotic AI systems drastically accelerates systematic and unbiased exploration of experimental search space, suggesting immense use in medicine and research.
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spelling pubmed-92396862022-06-29 Robotic search for optimal cell culture in regenerative medicine Kanda, Genki N Tsuzuki, Taku Terada, Motoki Sakai, Noriko Motozawa, Naohiro Masuda, Tomohiro Nishida, Mitsuhiro Watanabe, Chihaya T Higashi, Tatsuki Horiguchi, Shuhei A Kudo, Taku Kamei, Motohisa Sunagawa, Genshiro A Matsukuma, Kenji Sakurada, Takeshi Ozawa, Yosuke Takahashi, Masayo Takahashi, Koichi Natsume, Tohru eLife Computational and Systems Biology Induced differentiation is one of the most experience- and skill-dependent experimental processes in regenerative medicine, and establishing optimal conditions often takes years. We developed a robotic AI system with a batch Bayesian optimization algorithm that autonomously induces the differentiation of induced pluripotent stem cell-derived retinal pigment epithelial (iPSC-RPE) cells. From 200 million possible parameter combinations, the system performed cell culture in 143 different conditions in 111 days, resulting in 88% better iPSC-RPE production than that obtained by the pre-optimized culture in terms of the pigmentation scores. Our work demonstrates that the use of autonomous robotic AI systems drastically accelerates systematic and unbiased exploration of experimental search space, suggesting immense use in medicine and research. eLife Sciences Publications, Ltd 2022-06-28 /pmc/articles/PMC9239686/ /pubmed/35762203 http://dx.doi.org/10.7554/eLife.77007 Text en © 2022, Kanda, Tsuzuki et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Computational and Systems Biology
Kanda, Genki N
Tsuzuki, Taku
Terada, Motoki
Sakai, Noriko
Motozawa, Naohiro
Masuda, Tomohiro
Nishida, Mitsuhiro
Watanabe, Chihaya T
Higashi, Tatsuki
Horiguchi, Shuhei A
Kudo, Taku
Kamei, Motohisa
Sunagawa, Genshiro A
Matsukuma, Kenji
Sakurada, Takeshi
Ozawa, Yosuke
Takahashi, Masayo
Takahashi, Koichi
Natsume, Tohru
Robotic search for optimal cell culture in regenerative medicine
title Robotic search for optimal cell culture in regenerative medicine
title_full Robotic search for optimal cell culture in regenerative medicine
title_fullStr Robotic search for optimal cell culture in regenerative medicine
title_full_unstemmed Robotic search for optimal cell culture in regenerative medicine
title_short Robotic search for optimal cell culture in regenerative medicine
title_sort robotic search for optimal cell culture in regenerative medicine
topic Computational and Systems Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9239686/
https://www.ncbi.nlm.nih.gov/pubmed/35762203
http://dx.doi.org/10.7554/eLife.77007
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