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Robotic search for optimal cell culture in regenerative medicine
Induced differentiation is one of the most experience- and skill-dependent experimental processes in regenerative medicine, and establishing optimal conditions often takes years. We developed a robotic AI system with a batch Bayesian optimization algorithm that autonomously induces the differentiati...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9239686/ https://www.ncbi.nlm.nih.gov/pubmed/35762203 http://dx.doi.org/10.7554/eLife.77007 |
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author | Kanda, Genki N Tsuzuki, Taku Terada, Motoki Sakai, Noriko Motozawa, Naohiro Masuda, Tomohiro Nishida, Mitsuhiro Watanabe, Chihaya T Higashi, Tatsuki Horiguchi, Shuhei A Kudo, Taku Kamei, Motohisa Sunagawa, Genshiro A Matsukuma, Kenji Sakurada, Takeshi Ozawa, Yosuke Takahashi, Masayo Takahashi, Koichi Natsume, Tohru |
author_facet | Kanda, Genki N Tsuzuki, Taku Terada, Motoki Sakai, Noriko Motozawa, Naohiro Masuda, Tomohiro Nishida, Mitsuhiro Watanabe, Chihaya T Higashi, Tatsuki Horiguchi, Shuhei A Kudo, Taku Kamei, Motohisa Sunagawa, Genshiro A Matsukuma, Kenji Sakurada, Takeshi Ozawa, Yosuke Takahashi, Masayo Takahashi, Koichi Natsume, Tohru |
author_sort | Kanda, Genki N |
collection | PubMed |
description | Induced differentiation is one of the most experience- and skill-dependent experimental processes in regenerative medicine, and establishing optimal conditions often takes years. We developed a robotic AI system with a batch Bayesian optimization algorithm that autonomously induces the differentiation of induced pluripotent stem cell-derived retinal pigment epithelial (iPSC-RPE) cells. From 200 million possible parameter combinations, the system performed cell culture in 143 different conditions in 111 days, resulting in 88% better iPSC-RPE production than that obtained by the pre-optimized culture in terms of the pigmentation scores. Our work demonstrates that the use of autonomous robotic AI systems drastically accelerates systematic and unbiased exploration of experimental search space, suggesting immense use in medicine and research. |
format | Online Article Text |
id | pubmed-9239686 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-92396862022-06-29 Robotic search for optimal cell culture in regenerative medicine Kanda, Genki N Tsuzuki, Taku Terada, Motoki Sakai, Noriko Motozawa, Naohiro Masuda, Tomohiro Nishida, Mitsuhiro Watanabe, Chihaya T Higashi, Tatsuki Horiguchi, Shuhei A Kudo, Taku Kamei, Motohisa Sunagawa, Genshiro A Matsukuma, Kenji Sakurada, Takeshi Ozawa, Yosuke Takahashi, Masayo Takahashi, Koichi Natsume, Tohru eLife Computational and Systems Biology Induced differentiation is one of the most experience- and skill-dependent experimental processes in regenerative medicine, and establishing optimal conditions often takes years. We developed a robotic AI system with a batch Bayesian optimization algorithm that autonomously induces the differentiation of induced pluripotent stem cell-derived retinal pigment epithelial (iPSC-RPE) cells. From 200 million possible parameter combinations, the system performed cell culture in 143 different conditions in 111 days, resulting in 88% better iPSC-RPE production than that obtained by the pre-optimized culture in terms of the pigmentation scores. Our work demonstrates that the use of autonomous robotic AI systems drastically accelerates systematic and unbiased exploration of experimental search space, suggesting immense use in medicine and research. eLife Sciences Publications, Ltd 2022-06-28 /pmc/articles/PMC9239686/ /pubmed/35762203 http://dx.doi.org/10.7554/eLife.77007 Text en © 2022, Kanda, Tsuzuki et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Computational and Systems Biology Kanda, Genki N Tsuzuki, Taku Terada, Motoki Sakai, Noriko Motozawa, Naohiro Masuda, Tomohiro Nishida, Mitsuhiro Watanabe, Chihaya T Higashi, Tatsuki Horiguchi, Shuhei A Kudo, Taku Kamei, Motohisa Sunagawa, Genshiro A Matsukuma, Kenji Sakurada, Takeshi Ozawa, Yosuke Takahashi, Masayo Takahashi, Koichi Natsume, Tohru Robotic search for optimal cell culture in regenerative medicine |
title | Robotic search for optimal cell culture in regenerative medicine |
title_full | Robotic search for optimal cell culture in regenerative medicine |
title_fullStr | Robotic search for optimal cell culture in regenerative medicine |
title_full_unstemmed | Robotic search for optimal cell culture in regenerative medicine |
title_short | Robotic search for optimal cell culture in regenerative medicine |
title_sort | robotic search for optimal cell culture in regenerative medicine |
topic | Computational and Systems Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9239686/ https://www.ncbi.nlm.nih.gov/pubmed/35762203 http://dx.doi.org/10.7554/eLife.77007 |
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