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Multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer

Patients with high-grade serous ovarian cancer suffer poor prognosis and variable response to treatment. Known prognostic factors for this disease include homologous recombination deficiency status, age, pathological stage and residual disease status after debulking surgery. Recent work has highligh...

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Autores principales: Boehm, Kevin M., Aherne, Emily A., Ellenson, Lora, Nikolovski, Ines, Alghamdi, Mohammed, Vázquez-García, Ignacio, Zamarin, Dmitriy, Long Roche, Kara, Liu, Ying, Patel, Druv, Aukerman, Andrew, Pasha, Arfath, Rose, Doori, Selenica, Pier, Causa Andrieu, Pamela I., Fong, Chris, Capanu, Marinela, Reis-Filho, Jorge S., Vanguri, Rami, Veeraraghavan, Harini, Gangai, Natalie, Sosa, Ramon, Leung, Samantha, McPherson, Andrew, Gao, JianJiong, Lakhman, Yulia, Shah, Sohrab P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group US 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9239907/
https://www.ncbi.nlm.nih.gov/pubmed/35764743
http://dx.doi.org/10.1038/s43018-022-00388-9
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author Boehm, Kevin M.
Aherne, Emily A.
Ellenson, Lora
Nikolovski, Ines
Alghamdi, Mohammed
Vázquez-García, Ignacio
Zamarin, Dmitriy
Long Roche, Kara
Liu, Ying
Patel, Druv
Aukerman, Andrew
Pasha, Arfath
Rose, Doori
Selenica, Pier
Causa Andrieu, Pamela I.
Fong, Chris
Capanu, Marinela
Reis-Filho, Jorge S.
Vanguri, Rami
Veeraraghavan, Harini
Gangai, Natalie
Sosa, Ramon
Leung, Samantha
McPherson, Andrew
Gao, JianJiong
Lakhman, Yulia
Shah, Sohrab P.
author_facet Boehm, Kevin M.
Aherne, Emily A.
Ellenson, Lora
Nikolovski, Ines
Alghamdi, Mohammed
Vázquez-García, Ignacio
Zamarin, Dmitriy
Long Roche, Kara
Liu, Ying
Patel, Druv
Aukerman, Andrew
Pasha, Arfath
Rose, Doori
Selenica, Pier
Causa Andrieu, Pamela I.
Fong, Chris
Capanu, Marinela
Reis-Filho, Jorge S.
Vanguri, Rami
Veeraraghavan, Harini
Gangai, Natalie
Sosa, Ramon
Leung, Samantha
McPherson, Andrew
Gao, JianJiong
Lakhman, Yulia
Shah, Sohrab P.
author_sort Boehm, Kevin M.
collection PubMed
description Patients with high-grade serous ovarian cancer suffer poor prognosis and variable response to treatment. Known prognostic factors for this disease include homologous recombination deficiency status, age, pathological stage and residual disease status after debulking surgery. Recent work has highlighted important prognostic information captured in computed tomography and histopathological specimens, which can be exploited through machine learning. However, little is known about the capacity of combining features from these disparate sources to improve prediction of treatment response. Here, we assembled a multimodal dataset of 444 patients with primarily late-stage high-grade serous ovarian cancer and discovered quantitative features, such as tumor nuclear size on staining with hematoxylin and eosin and omental texture on contrast-enhanced computed tomography, associated with prognosis. We found that these features contributed complementary prognostic information relative to one another and clinicogenomic features. By fusing histopathological, radiologic and clinicogenomic machine-learning models, we demonstrate a promising path toward improved risk stratification of patients with cancer through multimodal data integration.
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spelling pubmed-92399072022-06-30 Multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer Boehm, Kevin M. Aherne, Emily A. Ellenson, Lora Nikolovski, Ines Alghamdi, Mohammed Vázquez-García, Ignacio Zamarin, Dmitriy Long Roche, Kara Liu, Ying Patel, Druv Aukerman, Andrew Pasha, Arfath Rose, Doori Selenica, Pier Causa Andrieu, Pamela I. Fong, Chris Capanu, Marinela Reis-Filho, Jorge S. Vanguri, Rami Veeraraghavan, Harini Gangai, Natalie Sosa, Ramon Leung, Samantha McPherson, Andrew Gao, JianJiong Lakhman, Yulia Shah, Sohrab P. Nat Cancer Article Patients with high-grade serous ovarian cancer suffer poor prognosis and variable response to treatment. Known prognostic factors for this disease include homologous recombination deficiency status, age, pathological stage and residual disease status after debulking surgery. Recent work has highlighted important prognostic information captured in computed tomography and histopathological specimens, which can be exploited through machine learning. However, little is known about the capacity of combining features from these disparate sources to improve prediction of treatment response. Here, we assembled a multimodal dataset of 444 patients with primarily late-stage high-grade serous ovarian cancer and discovered quantitative features, such as tumor nuclear size on staining with hematoxylin and eosin and omental texture on contrast-enhanced computed tomography, associated with prognosis. We found that these features contributed complementary prognostic information relative to one another and clinicogenomic features. By fusing histopathological, radiologic and clinicogenomic machine-learning models, we demonstrate a promising path toward improved risk stratification of patients with cancer through multimodal data integration. Nature Publishing Group US 2022-06-28 2022 /pmc/articles/PMC9239907/ /pubmed/35764743 http://dx.doi.org/10.1038/s43018-022-00388-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Boehm, Kevin M.
Aherne, Emily A.
Ellenson, Lora
Nikolovski, Ines
Alghamdi, Mohammed
Vázquez-García, Ignacio
Zamarin, Dmitriy
Long Roche, Kara
Liu, Ying
Patel, Druv
Aukerman, Andrew
Pasha, Arfath
Rose, Doori
Selenica, Pier
Causa Andrieu, Pamela I.
Fong, Chris
Capanu, Marinela
Reis-Filho, Jorge S.
Vanguri, Rami
Veeraraghavan, Harini
Gangai, Natalie
Sosa, Ramon
Leung, Samantha
McPherson, Andrew
Gao, JianJiong
Lakhman, Yulia
Shah, Sohrab P.
Multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer
title Multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer
title_full Multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer
title_fullStr Multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer
title_full_unstemmed Multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer
title_short Multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer
title_sort multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9239907/
https://www.ncbi.nlm.nih.gov/pubmed/35764743
http://dx.doi.org/10.1038/s43018-022-00388-9
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