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Assessing the performance of different outcomes for tumor growth studies with animal models
The consistency of reporting results for patient‐derived xenograft (PDX) studies is an area of concern. The PDX method commonly starts by implanting a derivative of a human tumor into a mouse, then comparing the tumor growth under different treatment conditions. Currently, a wide array of statistica...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9240739/ https://www.ncbi.nlm.nih.gov/pubmed/35699330 http://dx.doi.org/10.1002/ame2.12250 |
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author | Patten, Luke W. Blatchford, Patrick Strand, Matthew Kaizer, Alexander M. |
author_facet | Patten, Luke W. Blatchford, Patrick Strand, Matthew Kaizer, Alexander M. |
author_sort | Patten, Luke W. |
collection | PubMed |
description | The consistency of reporting results for patient‐derived xenograft (PDX) studies is an area of concern. The PDX method commonly starts by implanting a derivative of a human tumor into a mouse, then comparing the tumor growth under different treatment conditions. Currently, a wide array of statistical methods (e.g., t‐test, regression, chi‐squared test) are used to analyze these data, which ultimately depend on the outcome chosen (e.g., tumor volume, relative growth, categorical growth). In this simulation study, we provide empirical evidence for the outcome selection process by comparing the performance of both commonly used outcomes and novel variations of common outcomes used in PDX studies. Data were simulated to mimic tumor growth under multiple scenarios, then each outcome of interest was evaluated for 10 000 iterations. Comparisons between different outcomes were made with respect to average bias, variance, type‐1 error, and power. A total of 18 continuous, categorical, and time‐to‐event outcomes were evaluated, with ultimately 2 outcomes outperforming the others: final tumor volume and change in tumor volume from baseline. Notably, the novel variations of the tumor growth inhibition index (TGII)—a commonly used outcome in PDX studies—was found to perform poorly in several scenarios with inflated type‐1 error rates and a relatively large bias. Finally, all outcomes of interest were applied to a real‐world dataset. |
format | Online Article Text |
id | pubmed-9240739 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92407392022-07-01 Assessing the performance of different outcomes for tumor growth studies with animal models Patten, Luke W. Blatchford, Patrick Strand, Matthew Kaizer, Alexander M. Animal Model Exp Med Regular Articles The consistency of reporting results for patient‐derived xenograft (PDX) studies is an area of concern. The PDX method commonly starts by implanting a derivative of a human tumor into a mouse, then comparing the tumor growth under different treatment conditions. Currently, a wide array of statistical methods (e.g., t‐test, regression, chi‐squared test) are used to analyze these data, which ultimately depend on the outcome chosen (e.g., tumor volume, relative growth, categorical growth). In this simulation study, we provide empirical evidence for the outcome selection process by comparing the performance of both commonly used outcomes and novel variations of common outcomes used in PDX studies. Data were simulated to mimic tumor growth under multiple scenarios, then each outcome of interest was evaluated for 10 000 iterations. Comparisons between different outcomes were made with respect to average bias, variance, type‐1 error, and power. A total of 18 continuous, categorical, and time‐to‐event outcomes were evaluated, with ultimately 2 outcomes outperforming the others: final tumor volume and change in tumor volume from baseline. Notably, the novel variations of the tumor growth inhibition index (TGII)—a commonly used outcome in PDX studies—was found to perform poorly in several scenarios with inflated type‐1 error rates and a relatively large bias. Finally, all outcomes of interest were applied to a real‐world dataset. John Wiley and Sons Inc. 2022-06-14 /pmc/articles/PMC9240739/ /pubmed/35699330 http://dx.doi.org/10.1002/ame2.12250 Text en © 2022 The Authors. Animal Models and Experimental Medicine published by John Wiley & Sons Australia, Ltd on behalf of The Chinese Association for Laboratory Animal Sciences. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Regular Articles Patten, Luke W. Blatchford, Patrick Strand, Matthew Kaizer, Alexander M. Assessing the performance of different outcomes for tumor growth studies with animal models |
title | Assessing the performance of different outcomes for tumor growth studies with animal models |
title_full | Assessing the performance of different outcomes for tumor growth studies with animal models |
title_fullStr | Assessing the performance of different outcomes for tumor growth studies with animal models |
title_full_unstemmed | Assessing the performance of different outcomes for tumor growth studies with animal models |
title_short | Assessing the performance of different outcomes for tumor growth studies with animal models |
title_sort | assessing the performance of different outcomes for tumor growth studies with animal models |
topic | Regular Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9240739/ https://www.ncbi.nlm.nih.gov/pubmed/35699330 http://dx.doi.org/10.1002/ame2.12250 |
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