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Framework for COVID-19 segmentation and classification based on deep learning of computed tomography lung images

Corona Virus Disease 2019 (COVID-19) has affected millions of people worldwide and caused more than 6.3 million deaths (World Health Organization, June 2022). Increased attempts have been made to develop deep learning methods to diagnose COVID-19 based on computed tomography (CT) lung images. It is...

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Detalles Bibliográficos
Autores principales: Salama, Wessam M., Aly, Moustafa H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: University of Electronic Science and Technology of China. Publishing Services provided by Elsevier B.V. on behalf of KeAi Communications Co. Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9242681/
http://dx.doi.org/10.1016/j.jnlest.2022.100161
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author Salama, Wessam M.
Aly, Moustafa H.
author_facet Salama, Wessam M.
Aly, Moustafa H.
author_sort Salama, Wessam M.
collection PubMed
description Corona Virus Disease 2019 (COVID-19) has affected millions of people worldwide and caused more than 6.3 million deaths (World Health Organization, June 2022). Increased attempts have been made to develop deep learning methods to diagnose COVID-19 based on computed tomography (CT) lung images. It is a challenge to reproduce and obtain the CT lung data, because it is not publicly available. This paper introduces a new generalized framework to segment and classify CT images and determine whether a patient is tested positive or negative for COVID-19 based on lung CT images. In this work, many different strategies are explored for the classification task. ResNet50 and VGG16 models are applied to classify CT lung images into COVID-19 positive or negative. Also, VGG16 and ReNet50 combined with U-Net, which is one of the most used architectures in deep learning for image segmentation, are employed to segment CT lung images before the classifying process to increase system performance. Moreover, the image size dependent normalization technique (ISDNT) and Wiener filter are utilized as the preprocessing techniques to enhance images and noise suppression. Additionally, transfer learning and data augmentation techniques are performed to solve the problem of COVID-19 CT lung images deficiency, therefore the over-fitting of deep models can be avoided. The proposed frameworks, which comprise of, end-to-end, VGG16, ResNet50, and U-Net with VGG16 or ResNet50, are applied on the dataset which is sourced from COVID-19 lung CT images in Kaggle. The classification results show that using the preprocessed CT lung images as the input for U-Net hybrid with ResNet50 achieves the best performance. The proposed classification model achieves 98.98% accuracy (ACC), 98.87% area under the ROC curve (AUC), 98.89% sensitivity (Se), 97.99% precision (Pr), 97.88% F(1)- score, and 1.8974-second computational time.
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spelling pubmed-92426812022-06-30 Framework for COVID-19 segmentation and classification based on deep learning of computed tomography lung images Salama, Wessam M. Aly, Moustafa H. Journal of Electronic Science and Technology Article Corona Virus Disease 2019 (COVID-19) has affected millions of people worldwide and caused more than 6.3 million deaths (World Health Organization, June 2022). Increased attempts have been made to develop deep learning methods to diagnose COVID-19 based on computed tomography (CT) lung images. It is a challenge to reproduce and obtain the CT lung data, because it is not publicly available. This paper introduces a new generalized framework to segment and classify CT images and determine whether a patient is tested positive or negative for COVID-19 based on lung CT images. In this work, many different strategies are explored for the classification task. ResNet50 and VGG16 models are applied to classify CT lung images into COVID-19 positive or negative. Also, VGG16 and ReNet50 combined with U-Net, which is one of the most used architectures in deep learning for image segmentation, are employed to segment CT lung images before the classifying process to increase system performance. Moreover, the image size dependent normalization technique (ISDNT) and Wiener filter are utilized as the preprocessing techniques to enhance images and noise suppression. Additionally, transfer learning and data augmentation techniques are performed to solve the problem of COVID-19 CT lung images deficiency, therefore the over-fitting of deep models can be avoided. The proposed frameworks, which comprise of, end-to-end, VGG16, ResNet50, and U-Net with VGG16 or ResNet50, are applied on the dataset which is sourced from COVID-19 lung CT images in Kaggle. The classification results show that using the preprocessed CT lung images as the input for U-Net hybrid with ResNet50 achieves the best performance. The proposed classification model achieves 98.98% accuracy (ACC), 98.87% area under the ROC curve (AUC), 98.89% sensitivity (Se), 97.99% precision (Pr), 97.88% F(1)- score, and 1.8974-second computational time. University of Electronic Science and Technology of China. Publishing Services provided by Elsevier B.V. on behalf of KeAi Communications Co. Ltd. 2022-09 2022-06-30 /pmc/articles/PMC9242681/ http://dx.doi.org/10.1016/j.jnlest.2022.100161 Text en © 2022 University of Electronic Science and Technology of China. Publishing Services provided by Elsevier B.V. on behalf of KeAi Communications Co. Ltd. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Salama, Wessam M.
Aly, Moustafa H.
Framework for COVID-19 segmentation and classification based on deep learning of computed tomography lung images
title Framework for COVID-19 segmentation and classification based on deep learning of computed tomography lung images
title_full Framework for COVID-19 segmentation and classification based on deep learning of computed tomography lung images
title_fullStr Framework for COVID-19 segmentation and classification based on deep learning of computed tomography lung images
title_full_unstemmed Framework for COVID-19 segmentation and classification based on deep learning of computed tomography lung images
title_short Framework for COVID-19 segmentation and classification based on deep learning of computed tomography lung images
title_sort framework for covid-19 segmentation and classification based on deep learning of computed tomography lung images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9242681/
http://dx.doi.org/10.1016/j.jnlest.2022.100161
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