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Prediction of Necroptosis-Related Markers in Head and Neck Carcinoma by Bioinformatics

Necroptosis is a form of programmed cell death that has recently been shown to be important in the progression of head and neck cancer (HNC). Noncoding RNAs (ncRNAs) are known to function in cell death and tumor formation. In this study, we focused on microRNAs (miRNA) that play roles in necroptosis...

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Autores principales: Zheng, Lin, Li, Minhui, Gu, Ruiyuan, Zhang, Haoxiang, Qi, Xiaotong, Dong, Honglin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9242746/
https://www.ncbi.nlm.nih.gov/pubmed/35785035
http://dx.doi.org/10.1155/2022/1993023
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author Zheng, Lin
Li, Minhui
Gu, Ruiyuan
Zhang, Haoxiang
Qi, Xiaotong
Dong, Honglin
author_facet Zheng, Lin
Li, Minhui
Gu, Ruiyuan
Zhang, Haoxiang
Qi, Xiaotong
Dong, Honglin
author_sort Zheng, Lin
collection PubMed
description Necroptosis is a form of programmed cell death that has recently been shown to be important in the progression of head and neck cancer (HNC). Noncoding RNAs (ncRNAs) are known to function in cell death and tumor formation. In this study, we focused on microRNAs (miRNA) that play roles in necroptosis and the progression of HNC. We collected miRNA expression data, related clinical data of patients with HNC, and miRNA data related to necroptosis. A prognostic multimiRNA molecular marker was generated based on differential expression analysis and univariate and multivariate Cox regression analyses. Target genes of the prognosis-related miRNAs were identified, and their functions were evaluated by Gene Ontology Enrichment Analysis to reveal the processes the miRNAs may be involved in. Eight potentially prognostic miRNAs were identified through differential expression analysis: miR-331-3p, miR-181d-5p, miR-181b-5p, miR-500a-3p, miR-425-5p, miR-181a-5p, miR-141-3p, and miR-200a-5p. Multivariate Cox regression identified the risk score as an independent prognostic factor (univariate Cox regression results: hazard ratio (HR): 2.2028, 95% confidence interval (CI): 1.2640–3.8388, P = 0.0053; multivariate Cox regression results: HR: 2.4168, 95% CI: 1.3743–4.2501, P = 0.0022). Survival curve analysis revealed that patients with a high risk score had a bad prognosis (P = 0.0109). A receiver operating characteristic curve showed that the model has a certain prediction ability. We identified 187 miRNA-related genes, which were enriched in “cell cycle” and “cellular senescence.” In conclusion, this study identified eight novel miRNA markers for predicting the prognosis of patients with HNC and paved the way for future research on necroptosis-related genes.
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spelling pubmed-92427462022-06-30 Prediction of Necroptosis-Related Markers in Head and Neck Carcinoma by Bioinformatics Zheng, Lin Li, Minhui Gu, Ruiyuan Zhang, Haoxiang Qi, Xiaotong Dong, Honglin J Immunol Res Research Article Necroptosis is a form of programmed cell death that has recently been shown to be important in the progression of head and neck cancer (HNC). Noncoding RNAs (ncRNAs) are known to function in cell death and tumor formation. In this study, we focused on microRNAs (miRNA) that play roles in necroptosis and the progression of HNC. We collected miRNA expression data, related clinical data of patients with HNC, and miRNA data related to necroptosis. A prognostic multimiRNA molecular marker was generated based on differential expression analysis and univariate and multivariate Cox regression analyses. Target genes of the prognosis-related miRNAs were identified, and their functions were evaluated by Gene Ontology Enrichment Analysis to reveal the processes the miRNAs may be involved in. Eight potentially prognostic miRNAs were identified through differential expression analysis: miR-331-3p, miR-181d-5p, miR-181b-5p, miR-500a-3p, miR-425-5p, miR-181a-5p, miR-141-3p, and miR-200a-5p. Multivariate Cox regression identified the risk score as an independent prognostic factor (univariate Cox regression results: hazard ratio (HR): 2.2028, 95% confidence interval (CI): 1.2640–3.8388, P = 0.0053; multivariate Cox regression results: HR: 2.4168, 95% CI: 1.3743–4.2501, P = 0.0022). Survival curve analysis revealed that patients with a high risk score had a bad prognosis (P = 0.0109). A receiver operating characteristic curve showed that the model has a certain prediction ability. We identified 187 miRNA-related genes, which were enriched in “cell cycle” and “cellular senescence.” In conclusion, this study identified eight novel miRNA markers for predicting the prognosis of patients with HNC and paved the way for future research on necroptosis-related genes. Hindawi 2022-06-22 /pmc/articles/PMC9242746/ /pubmed/35785035 http://dx.doi.org/10.1155/2022/1993023 Text en Copyright © 2022 Lin Zheng et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zheng, Lin
Li, Minhui
Gu, Ruiyuan
Zhang, Haoxiang
Qi, Xiaotong
Dong, Honglin
Prediction of Necroptosis-Related Markers in Head and Neck Carcinoma by Bioinformatics
title Prediction of Necroptosis-Related Markers in Head and Neck Carcinoma by Bioinformatics
title_full Prediction of Necroptosis-Related Markers in Head and Neck Carcinoma by Bioinformatics
title_fullStr Prediction of Necroptosis-Related Markers in Head and Neck Carcinoma by Bioinformatics
title_full_unstemmed Prediction of Necroptosis-Related Markers in Head and Neck Carcinoma by Bioinformatics
title_short Prediction of Necroptosis-Related Markers in Head and Neck Carcinoma by Bioinformatics
title_sort prediction of necroptosis-related markers in head and neck carcinoma by bioinformatics
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9242746/
https://www.ncbi.nlm.nih.gov/pubmed/35785035
http://dx.doi.org/10.1155/2022/1993023
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