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A guided multiverse study of neuroimaging analyses
For most neuroimaging questions the range of possible analytic choices makes it unclear how to evaluate conclusions from any single analytic method. One possible way to address this issue is to evaluate all possible analyses using a multiverse approach, however, this can be computationally challengi...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9243029/ https://www.ncbi.nlm.nih.gov/pubmed/35768409 http://dx.doi.org/10.1038/s41467-022-31347-8 |
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author | Dafflon, Jessica F. Da Costa, Pedro Váša, František Monti, Ricardo Pio Bzdok, Danilo Hellyer, Peter J. Turkheimer, Federico Smallwood, Jonathan Jones, Emily Leech, Robert |
author_facet | Dafflon, Jessica F. Da Costa, Pedro Váša, František Monti, Ricardo Pio Bzdok, Danilo Hellyer, Peter J. Turkheimer, Federico Smallwood, Jonathan Jones, Emily Leech, Robert |
author_sort | Dafflon, Jessica |
collection | PubMed |
description | For most neuroimaging questions the range of possible analytic choices makes it unclear how to evaluate conclusions from any single analytic method. One possible way to address this issue is to evaluate all possible analyses using a multiverse approach, however, this can be computationally challenging and sequential analyses on the same data can compromise predictive power. Here, we establish how active learning on a low-dimensional space capturing the inter-relationships between pipelines can efficiently approximate the full spectrum of analyses. This approach balances the benefits of a multiverse analysis without incurring the cost on computational and predictive power. We illustrate this approach with two functional MRI datasets (predicting brain age and autism diagnosis) demonstrating how a multiverse of analyses can be efficiently navigated and mapped out using active learning. Furthermore, our presented approach not only identifies the subset of analysis techniques that are best able to predict age or classify individuals with autism spectrum disorder and healthy controls, but it also allows the relationships between analyses to be quantified. |
format | Online Article Text |
id | pubmed-9243029 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-92430292022-07-01 A guided multiverse study of neuroimaging analyses Dafflon, Jessica F. Da Costa, Pedro Váša, František Monti, Ricardo Pio Bzdok, Danilo Hellyer, Peter J. Turkheimer, Federico Smallwood, Jonathan Jones, Emily Leech, Robert Nat Commun Article For most neuroimaging questions the range of possible analytic choices makes it unclear how to evaluate conclusions from any single analytic method. One possible way to address this issue is to evaluate all possible analyses using a multiverse approach, however, this can be computationally challenging and sequential analyses on the same data can compromise predictive power. Here, we establish how active learning on a low-dimensional space capturing the inter-relationships between pipelines can efficiently approximate the full spectrum of analyses. This approach balances the benefits of a multiverse analysis without incurring the cost on computational and predictive power. We illustrate this approach with two functional MRI datasets (predicting brain age and autism diagnosis) demonstrating how a multiverse of analyses can be efficiently navigated and mapped out using active learning. Furthermore, our presented approach not only identifies the subset of analysis techniques that are best able to predict age or classify individuals with autism spectrum disorder and healthy controls, but it also allows the relationships between analyses to be quantified. Nature Publishing Group UK 2022-06-29 /pmc/articles/PMC9243029/ /pubmed/35768409 http://dx.doi.org/10.1038/s41467-022-31347-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Dafflon, Jessica F. Da Costa, Pedro Váša, František Monti, Ricardo Pio Bzdok, Danilo Hellyer, Peter J. Turkheimer, Federico Smallwood, Jonathan Jones, Emily Leech, Robert A guided multiverse study of neuroimaging analyses |
title | A guided multiverse study of neuroimaging analyses |
title_full | A guided multiverse study of neuroimaging analyses |
title_fullStr | A guided multiverse study of neuroimaging analyses |
title_full_unstemmed | A guided multiverse study of neuroimaging analyses |
title_short | A guided multiverse study of neuroimaging analyses |
title_sort | guided multiverse study of neuroimaging analyses |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9243029/ https://www.ncbi.nlm.nih.gov/pubmed/35768409 http://dx.doi.org/10.1038/s41467-022-31347-8 |
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