Cargando…

A guided multiverse study of neuroimaging analyses

For most neuroimaging questions the range of possible analytic choices makes it unclear how to evaluate conclusions from any single analytic method. One possible way to address this issue is to evaluate all possible analyses using a multiverse approach, however, this can be computationally challengi...

Descripción completa

Detalles Bibliográficos
Autores principales: Dafflon, Jessica, F. Da Costa, Pedro, Váša, František, Monti, Ricardo Pio, Bzdok, Danilo, Hellyer, Peter J., Turkheimer, Federico, Smallwood, Jonathan, Jones, Emily, Leech, Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9243029/
https://www.ncbi.nlm.nih.gov/pubmed/35768409
http://dx.doi.org/10.1038/s41467-022-31347-8
_version_ 1784738211512188928
author Dafflon, Jessica
F. Da Costa, Pedro
Váša, František
Monti, Ricardo Pio
Bzdok, Danilo
Hellyer, Peter J.
Turkheimer, Federico
Smallwood, Jonathan
Jones, Emily
Leech, Robert
author_facet Dafflon, Jessica
F. Da Costa, Pedro
Váša, František
Monti, Ricardo Pio
Bzdok, Danilo
Hellyer, Peter J.
Turkheimer, Federico
Smallwood, Jonathan
Jones, Emily
Leech, Robert
author_sort Dafflon, Jessica
collection PubMed
description For most neuroimaging questions the range of possible analytic choices makes it unclear how to evaluate conclusions from any single analytic method. One possible way to address this issue is to evaluate all possible analyses using a multiverse approach, however, this can be computationally challenging and sequential analyses on the same data can compromise predictive power. Here, we establish how active learning on a low-dimensional space capturing the inter-relationships between pipelines can efficiently approximate the full spectrum of analyses. This approach balances the benefits of a multiverse analysis without incurring the cost on computational and predictive power. We illustrate this approach with two functional MRI datasets (predicting brain age and autism diagnosis) demonstrating how a multiverse of analyses can be efficiently navigated and mapped out using active learning. Furthermore, our presented approach not only identifies the subset of analysis techniques that are best able to predict age or classify individuals with autism spectrum disorder and healthy controls, but it also allows the relationships between analyses to be quantified.
format Online
Article
Text
id pubmed-9243029
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-92430292022-07-01 A guided multiverse study of neuroimaging analyses Dafflon, Jessica F. Da Costa, Pedro Váša, František Monti, Ricardo Pio Bzdok, Danilo Hellyer, Peter J. Turkheimer, Federico Smallwood, Jonathan Jones, Emily Leech, Robert Nat Commun Article For most neuroimaging questions the range of possible analytic choices makes it unclear how to evaluate conclusions from any single analytic method. One possible way to address this issue is to evaluate all possible analyses using a multiverse approach, however, this can be computationally challenging and sequential analyses on the same data can compromise predictive power. Here, we establish how active learning on a low-dimensional space capturing the inter-relationships between pipelines can efficiently approximate the full spectrum of analyses. This approach balances the benefits of a multiverse analysis without incurring the cost on computational and predictive power. We illustrate this approach with two functional MRI datasets (predicting brain age and autism diagnosis) demonstrating how a multiverse of analyses can be efficiently navigated and mapped out using active learning. Furthermore, our presented approach not only identifies the subset of analysis techniques that are best able to predict age or classify individuals with autism spectrum disorder and healthy controls, but it also allows the relationships between analyses to be quantified. Nature Publishing Group UK 2022-06-29 /pmc/articles/PMC9243029/ /pubmed/35768409 http://dx.doi.org/10.1038/s41467-022-31347-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Dafflon, Jessica
F. Da Costa, Pedro
Váša, František
Monti, Ricardo Pio
Bzdok, Danilo
Hellyer, Peter J.
Turkheimer, Federico
Smallwood, Jonathan
Jones, Emily
Leech, Robert
A guided multiverse study of neuroimaging analyses
title A guided multiverse study of neuroimaging analyses
title_full A guided multiverse study of neuroimaging analyses
title_fullStr A guided multiverse study of neuroimaging analyses
title_full_unstemmed A guided multiverse study of neuroimaging analyses
title_short A guided multiverse study of neuroimaging analyses
title_sort guided multiverse study of neuroimaging analyses
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9243029/
https://www.ncbi.nlm.nih.gov/pubmed/35768409
http://dx.doi.org/10.1038/s41467-022-31347-8
work_keys_str_mv AT dafflonjessica aguidedmultiversestudyofneuroimaginganalyses
AT fdacostapedro aguidedmultiversestudyofneuroimaginganalyses
AT vasafrantisek aguidedmultiversestudyofneuroimaginganalyses
AT montiricardopio aguidedmultiversestudyofneuroimaginganalyses
AT bzdokdanilo aguidedmultiversestudyofneuroimaginganalyses
AT hellyerpeterj aguidedmultiversestudyofneuroimaginganalyses
AT turkheimerfederico aguidedmultiversestudyofneuroimaginganalyses
AT smallwoodjonathan aguidedmultiversestudyofneuroimaginganalyses
AT jonesemily aguidedmultiversestudyofneuroimaginganalyses
AT leechrobert aguidedmultiversestudyofneuroimaginganalyses
AT dafflonjessica guidedmultiversestudyofneuroimaginganalyses
AT fdacostapedro guidedmultiversestudyofneuroimaginganalyses
AT vasafrantisek guidedmultiversestudyofneuroimaginganalyses
AT montiricardopio guidedmultiversestudyofneuroimaginganalyses
AT bzdokdanilo guidedmultiversestudyofneuroimaginganalyses
AT hellyerpeterj guidedmultiversestudyofneuroimaginganalyses
AT turkheimerfederico guidedmultiversestudyofneuroimaginganalyses
AT smallwoodjonathan guidedmultiversestudyofneuroimaginganalyses
AT jonesemily guidedmultiversestudyofneuroimaginganalyses
AT leechrobert guidedmultiversestudyofneuroimaginganalyses