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Multi-block data integration analysis for identifying and validating targeted N-glycans as biomarkers for type II diabetes mellitus
Plasma N-glycan profiles have been shown to be defective in type II diabetes Mellitus (T2DM) and holds a promise to discovering biomarkers. The study comprised 232 T2DM patients and 219 healthy individuals. N-glycans were analysed by high-performance liquid chromatography. The multivariate integrati...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9243128/ https://www.ncbi.nlm.nih.gov/pubmed/35768493 http://dx.doi.org/10.1038/s41598-022-15172-z |
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author | Adua, Eric Afrifa-Yamoah, Ebenezer Peprah-Yamoah, Emmanuel Anto, Enoch Odame Acheampong, Emmanuel Awuah-Mensah, Kwaafo Akoto Wang, Wei |
author_facet | Adua, Eric Afrifa-Yamoah, Ebenezer Peprah-Yamoah, Emmanuel Anto, Enoch Odame Acheampong, Emmanuel Awuah-Mensah, Kwaafo Akoto Wang, Wei |
author_sort | Adua, Eric |
collection | PubMed |
description | Plasma N-glycan profiles have been shown to be defective in type II diabetes Mellitus (T2DM) and holds a promise to discovering biomarkers. The study comprised 232 T2DM patients and 219 healthy individuals. N-glycans were analysed by high-performance liquid chromatography. The multivariate integrative framework, DIABLO was employed for the statistical analysis. N-glycan groups (GPs 34, 32, 26, 31, 36 and 30) were significantly expressed in T2DM in component 1 and GPs 38 and 20 were related to T2DM in component 2. Four clusters were observed based on the correlation of the expressive signatures of the 39 N-glycans across T2DM and controls. Cluster A, B, C and D had 16, 16, 4 and 3 N-glycans respectively, of which 11, 8, 1 and 1 were found to express differently between controls and T2DM in a univariate analysis [Formula: see text] . Multi-block analysis revealed that trigalactosylated (G3), triantennary (TRIA), high branching (HB) and trisialylated (S3) expressed significantly highly in T2DM than healthy controls. A bipartite relevance network revealed that HB, monogalactosylated (G1) and G3 were central in the network and observed more connections, highlighting their importance in discriminating between T2DM and healthy controls. Investigation of these N-glycans can enhance the understanding of T2DM. |
format | Online Article Text |
id | pubmed-9243128 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-92431282022-07-01 Multi-block data integration analysis for identifying and validating targeted N-glycans as biomarkers for type II diabetes mellitus Adua, Eric Afrifa-Yamoah, Ebenezer Peprah-Yamoah, Emmanuel Anto, Enoch Odame Acheampong, Emmanuel Awuah-Mensah, Kwaafo Akoto Wang, Wei Sci Rep Article Plasma N-glycan profiles have been shown to be defective in type II diabetes Mellitus (T2DM) and holds a promise to discovering biomarkers. The study comprised 232 T2DM patients and 219 healthy individuals. N-glycans were analysed by high-performance liquid chromatography. The multivariate integrative framework, DIABLO was employed for the statistical analysis. N-glycan groups (GPs 34, 32, 26, 31, 36 and 30) were significantly expressed in T2DM in component 1 and GPs 38 and 20 were related to T2DM in component 2. Four clusters were observed based on the correlation of the expressive signatures of the 39 N-glycans across T2DM and controls. Cluster A, B, C and D had 16, 16, 4 and 3 N-glycans respectively, of which 11, 8, 1 and 1 were found to express differently between controls and T2DM in a univariate analysis [Formula: see text] . Multi-block analysis revealed that trigalactosylated (G3), triantennary (TRIA), high branching (HB) and trisialylated (S3) expressed significantly highly in T2DM than healthy controls. A bipartite relevance network revealed that HB, monogalactosylated (G1) and G3 were central in the network and observed more connections, highlighting their importance in discriminating between T2DM and healthy controls. Investigation of these N-glycans can enhance the understanding of T2DM. Nature Publishing Group UK 2022-06-29 /pmc/articles/PMC9243128/ /pubmed/35768493 http://dx.doi.org/10.1038/s41598-022-15172-z Text en © The Author(s) 2022, corrected publication 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Adua, Eric Afrifa-Yamoah, Ebenezer Peprah-Yamoah, Emmanuel Anto, Enoch Odame Acheampong, Emmanuel Awuah-Mensah, Kwaafo Akoto Wang, Wei Multi-block data integration analysis for identifying and validating targeted N-glycans as biomarkers for type II diabetes mellitus |
title | Multi-block data integration analysis for identifying and validating targeted N-glycans as biomarkers for type II diabetes mellitus |
title_full | Multi-block data integration analysis for identifying and validating targeted N-glycans as biomarkers for type II diabetes mellitus |
title_fullStr | Multi-block data integration analysis for identifying and validating targeted N-glycans as biomarkers for type II diabetes mellitus |
title_full_unstemmed | Multi-block data integration analysis for identifying and validating targeted N-glycans as biomarkers for type II diabetes mellitus |
title_short | Multi-block data integration analysis for identifying and validating targeted N-glycans as biomarkers for type II diabetes mellitus |
title_sort | multi-block data integration analysis for identifying and validating targeted n-glycans as biomarkers for type ii diabetes mellitus |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9243128/ https://www.ncbi.nlm.nih.gov/pubmed/35768493 http://dx.doi.org/10.1038/s41598-022-15172-z |
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