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Path-ATT-CNN: A Novel Deep Neural Network Method for Key Pathway Identification of Lung Cancer

Attention convolutional neural networks (ATT-CNNs) have got a huge gain in picture operating and nature language processing. Shortage of interpretability cannot remain the adoption of deep neural networks. It is very conspicuous that is shown in the prediction model of disease aftermath. Biological...

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Autores principales: Yuan, Lin, Lai, Jinling, Zhao, Jing, Sun, Tao, Hu, Chunyu, Ye, Lan, Yu, Guanying, Yang, Zhenyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9243377/
https://www.ncbi.nlm.nih.gov/pubmed/35783280
http://dx.doi.org/10.3389/fgene.2022.896884
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author Yuan, Lin
Lai, Jinling
Zhao, Jing
Sun, Tao
Hu, Chunyu
Ye, Lan
Yu, Guanying
Yang, Zhenyu
author_facet Yuan, Lin
Lai, Jinling
Zhao, Jing
Sun, Tao
Hu, Chunyu
Ye, Lan
Yu, Guanying
Yang, Zhenyu
author_sort Yuan, Lin
collection PubMed
description Attention convolutional neural networks (ATT-CNNs) have got a huge gain in picture operating and nature language processing. Shortage of interpretability cannot remain the adoption of deep neural networks. It is very conspicuous that is shown in the prediction model of disease aftermath. Biological data are commonly revealed in a nominal grid data structured pattern. ATT-CNN cannot be applied directly. In order to figure out these issues, a novel method which is called the Path-ATT-CNN is proposed by us, making an explicable ATT-CNN model based on united omics data by making use of a recently characterized pathway image. Path-ATT-CNN shows brilliant predictive demonstration difference in primary lung tumor symptom (PLTS) and non-primary lung tumor symptom (non-PLTS) when applied to lung adenocarcinomas (LADCs). The imaginational tool adoption which is linked with statistical analysis enables the status of essential pathways which finally exist in LADCs. In conclusion, Path-ATT-CNN shows that it can be effectively put into use elucidating omics data in an interpretable mode. When people start to figure out key biological correlates of disease, this mode makes promising power in predicting illness.
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spelling pubmed-92433772022-07-01 Path-ATT-CNN: A Novel Deep Neural Network Method for Key Pathway Identification of Lung Cancer Yuan, Lin Lai, Jinling Zhao, Jing Sun, Tao Hu, Chunyu Ye, Lan Yu, Guanying Yang, Zhenyu Front Genet Genetics Attention convolutional neural networks (ATT-CNNs) have got a huge gain in picture operating and nature language processing. Shortage of interpretability cannot remain the adoption of deep neural networks. It is very conspicuous that is shown in the prediction model of disease aftermath. Biological data are commonly revealed in a nominal grid data structured pattern. ATT-CNN cannot be applied directly. In order to figure out these issues, a novel method which is called the Path-ATT-CNN is proposed by us, making an explicable ATT-CNN model based on united omics data by making use of a recently characterized pathway image. Path-ATT-CNN shows brilliant predictive demonstration difference in primary lung tumor symptom (PLTS) and non-primary lung tumor symptom (non-PLTS) when applied to lung adenocarcinomas (LADCs). The imaginational tool adoption which is linked with statistical analysis enables the status of essential pathways which finally exist in LADCs. In conclusion, Path-ATT-CNN shows that it can be effectively put into use elucidating omics data in an interpretable mode. When people start to figure out key biological correlates of disease, this mode makes promising power in predicting illness. Frontiers Media S.A. 2022-06-16 /pmc/articles/PMC9243377/ /pubmed/35783280 http://dx.doi.org/10.3389/fgene.2022.896884 Text en Copyright © 2022 Yuan, Lai, Zhao, Sun, Hu, Ye, Yu and Yang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Yuan, Lin
Lai, Jinling
Zhao, Jing
Sun, Tao
Hu, Chunyu
Ye, Lan
Yu, Guanying
Yang, Zhenyu
Path-ATT-CNN: A Novel Deep Neural Network Method for Key Pathway Identification of Lung Cancer
title Path-ATT-CNN: A Novel Deep Neural Network Method for Key Pathway Identification of Lung Cancer
title_full Path-ATT-CNN: A Novel Deep Neural Network Method for Key Pathway Identification of Lung Cancer
title_fullStr Path-ATT-CNN: A Novel Deep Neural Network Method for Key Pathway Identification of Lung Cancer
title_full_unstemmed Path-ATT-CNN: A Novel Deep Neural Network Method for Key Pathway Identification of Lung Cancer
title_short Path-ATT-CNN: A Novel Deep Neural Network Method for Key Pathway Identification of Lung Cancer
title_sort path-att-cnn: a novel deep neural network method for key pathway identification of lung cancer
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9243377/
https://www.ncbi.nlm.nih.gov/pubmed/35783280
http://dx.doi.org/10.3389/fgene.2022.896884
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