Cargando…

Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis

Childhood-onset schizophrenia (COS) is an unusual severe neurodevelopmental disorder of unknown etiology. In this study, we aimed to survey the missense variants in new cases of COS and also identify possible pathology biomarkers for COS. We found one list of mutated genes such as TTN, MUC12, and MU...

Descripción completa

Detalles Bibliográficos
Autores principales: He, Fan, Zhou, Yu-ming, Qi, Yan-jie, Huang, Huan-huan, Guan, Lin, Luo, Jie, Cheng, Yu-hang, Zheng, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9243414/
https://www.ncbi.nlm.nih.gov/pubmed/35783128
http://dx.doi.org/10.3389/fnagi.2022.829217
_version_ 1784738303347523584
author He, Fan
Zhou, Yu-ming
Qi, Yan-jie
Huang, Huan-huan
Guan, Lin
Luo, Jie
Cheng, Yu-hang
Zheng, Yi
author_facet He, Fan
Zhou, Yu-ming
Qi, Yan-jie
Huang, Huan-huan
Guan, Lin
Luo, Jie
Cheng, Yu-hang
Zheng, Yi
author_sort He, Fan
collection PubMed
description Childhood-onset schizophrenia (COS) is an unusual severe neurodevelopmental disorder of unknown etiology. In this study, we aimed to survey the missense variants in new cases of COS and also identify possible pathology biomarkers for COS. We found one list of mutated genes such as TTN, MUC12, and MUC2, which are the candidates to be involved in the etiology of COS. Next, we used WGSNA to predict COS disease-related genes and identified differential DNA methylation among COS disease groups, COS dangerous groups, and normal groups and found eight methylation sites that can be used as the diagnostic biomarkers. A total of six key genes are obtained through the intersection analysis between weighted correlation network analysis (WGCNA) mode, methylation-related genes, and differentially expressed genes (DGenes). These genes may play important roles in the progression of COS and serve as the potential biomarkers for future diagnosis. Our results might help to design the molecule or gene-targeted drugs for COS.
format Online
Article
Text
id pubmed-9243414
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-92434142022-07-01 Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis He, Fan Zhou, Yu-ming Qi, Yan-jie Huang, Huan-huan Guan, Lin Luo, Jie Cheng, Yu-hang Zheng, Yi Front Aging Neurosci Neuroscience Childhood-onset schizophrenia (COS) is an unusual severe neurodevelopmental disorder of unknown etiology. In this study, we aimed to survey the missense variants in new cases of COS and also identify possible pathology biomarkers for COS. We found one list of mutated genes such as TTN, MUC12, and MUC2, which are the candidates to be involved in the etiology of COS. Next, we used WGSNA to predict COS disease-related genes and identified differential DNA methylation among COS disease groups, COS dangerous groups, and normal groups and found eight methylation sites that can be used as the diagnostic biomarkers. A total of six key genes are obtained through the intersection analysis between weighted correlation network analysis (WGCNA) mode, methylation-related genes, and differentially expressed genes (DGenes). These genes may play important roles in the progression of COS and serve as the potential biomarkers for future diagnosis. Our results might help to design the molecule or gene-targeted drugs for COS. Frontiers Media S.A. 2022-06-16 /pmc/articles/PMC9243414/ /pubmed/35783128 http://dx.doi.org/10.3389/fnagi.2022.829217 Text en Copyright © 2022 He, Zhou, Qi, Huang, Guan, Luo, Cheng and Zheng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
He, Fan
Zhou, Yu-ming
Qi, Yan-jie
Huang, Huan-huan
Guan, Lin
Luo, Jie
Cheng, Yu-hang
Zheng, Yi
Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis
title Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis
title_full Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis
title_fullStr Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis
title_full_unstemmed Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis
title_short Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis
title_sort exploration of mutated genes and prediction of potential biomarkers for childhood-onset schizophrenia using an integrated bioinformatic analysis
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9243414/
https://www.ncbi.nlm.nih.gov/pubmed/35783128
http://dx.doi.org/10.3389/fnagi.2022.829217
work_keys_str_mv AT hefan explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis
AT zhouyuming explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis
AT qiyanjie explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis
AT huanghuanhuan explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis
AT guanlin explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis
AT luojie explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis
AT chengyuhang explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis
AT zhengyi explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis