Cargando…
Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis
Childhood-onset schizophrenia (COS) is an unusual severe neurodevelopmental disorder of unknown etiology. In this study, we aimed to survey the missense variants in new cases of COS and also identify possible pathology biomarkers for COS. We found one list of mutated genes such as TTN, MUC12, and MU...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9243414/ https://www.ncbi.nlm.nih.gov/pubmed/35783128 http://dx.doi.org/10.3389/fnagi.2022.829217 |
_version_ | 1784738303347523584 |
---|---|
author | He, Fan Zhou, Yu-ming Qi, Yan-jie Huang, Huan-huan Guan, Lin Luo, Jie Cheng, Yu-hang Zheng, Yi |
author_facet | He, Fan Zhou, Yu-ming Qi, Yan-jie Huang, Huan-huan Guan, Lin Luo, Jie Cheng, Yu-hang Zheng, Yi |
author_sort | He, Fan |
collection | PubMed |
description | Childhood-onset schizophrenia (COS) is an unusual severe neurodevelopmental disorder of unknown etiology. In this study, we aimed to survey the missense variants in new cases of COS and also identify possible pathology biomarkers for COS. We found one list of mutated genes such as TTN, MUC12, and MUC2, which are the candidates to be involved in the etiology of COS. Next, we used WGSNA to predict COS disease-related genes and identified differential DNA methylation among COS disease groups, COS dangerous groups, and normal groups and found eight methylation sites that can be used as the diagnostic biomarkers. A total of six key genes are obtained through the intersection analysis between weighted correlation network analysis (WGCNA) mode, methylation-related genes, and differentially expressed genes (DGenes). These genes may play important roles in the progression of COS and serve as the potential biomarkers for future diagnosis. Our results might help to design the molecule or gene-targeted drugs for COS. |
format | Online Article Text |
id | pubmed-9243414 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92434142022-07-01 Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis He, Fan Zhou, Yu-ming Qi, Yan-jie Huang, Huan-huan Guan, Lin Luo, Jie Cheng, Yu-hang Zheng, Yi Front Aging Neurosci Neuroscience Childhood-onset schizophrenia (COS) is an unusual severe neurodevelopmental disorder of unknown etiology. In this study, we aimed to survey the missense variants in new cases of COS and also identify possible pathology biomarkers for COS. We found one list of mutated genes such as TTN, MUC12, and MUC2, which are the candidates to be involved in the etiology of COS. Next, we used WGSNA to predict COS disease-related genes and identified differential DNA methylation among COS disease groups, COS dangerous groups, and normal groups and found eight methylation sites that can be used as the diagnostic biomarkers. A total of six key genes are obtained through the intersection analysis between weighted correlation network analysis (WGCNA) mode, methylation-related genes, and differentially expressed genes (DGenes). These genes may play important roles in the progression of COS and serve as the potential biomarkers for future diagnosis. Our results might help to design the molecule or gene-targeted drugs for COS. Frontiers Media S.A. 2022-06-16 /pmc/articles/PMC9243414/ /pubmed/35783128 http://dx.doi.org/10.3389/fnagi.2022.829217 Text en Copyright © 2022 He, Zhou, Qi, Huang, Guan, Luo, Cheng and Zheng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience He, Fan Zhou, Yu-ming Qi, Yan-jie Huang, Huan-huan Guan, Lin Luo, Jie Cheng, Yu-hang Zheng, Yi Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis |
title | Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis |
title_full | Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis |
title_fullStr | Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis |
title_full_unstemmed | Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis |
title_short | Exploration of Mutated Genes and Prediction of Potential Biomarkers for Childhood-Onset Schizophrenia Using an Integrated Bioinformatic Analysis |
title_sort | exploration of mutated genes and prediction of potential biomarkers for childhood-onset schizophrenia using an integrated bioinformatic analysis |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9243414/ https://www.ncbi.nlm.nih.gov/pubmed/35783128 http://dx.doi.org/10.3389/fnagi.2022.829217 |
work_keys_str_mv | AT hefan explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis AT zhouyuming explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis AT qiyanjie explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis AT huanghuanhuan explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis AT guanlin explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis AT luojie explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis AT chengyuhang explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis AT zhengyi explorationofmutatedgenesandpredictionofpotentialbiomarkersforchildhoodonsetschizophreniausinganintegratedbioinformaticanalysis |