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Early detection of COPD based on graph convolutional network and small and weakly labeled data
Chronic obstructive pulmonary disease (COPD) is a common disease with high morbidity and mortality, where early detection benefits the population. However, the early diagnosis rate of COPD is low due to the absence or slight early symptoms. In this paper, a novel method based on graph convolution ne...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9244127/ https://www.ncbi.nlm.nih.gov/pubmed/35750976 http://dx.doi.org/10.1007/s11517-022-02589-x |
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author | Li, Zongli Huang, Kewu Liu, Ligong Zhang, Zuoqing |
author_facet | Li, Zongli Huang, Kewu Liu, Ligong Zhang, Zuoqing |
author_sort | Li, Zongli |
collection | PubMed |
description | Chronic obstructive pulmonary disease (COPD) is a common disease with high morbidity and mortality, where early detection benefits the population. However, the early diagnosis rate of COPD is low due to the absence or slight early symptoms. In this paper, a novel method based on graph convolution network (GCN) for early detection of COPD is proposed, which uses small and weakly labeled chest computed tomography image data from the publicly available Danish Lung Cancer Screening Trial database. The key idea is to construct a graph using regions of interest randomly selected from the segmented lung parenchyma and then input it into the GCN model for COPD detection. In this way, the model can not only extract the feature information of each region of interest but also the topological structure information between regions of interest, that is, graph structure information. The proposed GCN model achieves an acceptable performance with an accuracy of 0.77 and an area under a curve of 0.81, which is higher than the previous studies on the same dataset. GCN model also outperforms several state-of-the-art methods trained at the same time. As far as we know, it is also the first time using the GCN model on this dataset for COPD detection. GRAPHICAL ABSTRACT: [Image: see text] |
format | Online Article Text |
id | pubmed-9244127 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-92441272022-06-30 Early detection of COPD based on graph convolutional network and small and weakly labeled data Li, Zongli Huang, Kewu Liu, Ligong Zhang, Zuoqing Med Biol Eng Comput Original Article Chronic obstructive pulmonary disease (COPD) is a common disease with high morbidity and mortality, where early detection benefits the population. However, the early diagnosis rate of COPD is low due to the absence or slight early symptoms. In this paper, a novel method based on graph convolution network (GCN) for early detection of COPD is proposed, which uses small and weakly labeled chest computed tomography image data from the publicly available Danish Lung Cancer Screening Trial database. The key idea is to construct a graph using regions of interest randomly selected from the segmented lung parenchyma and then input it into the GCN model for COPD detection. In this way, the model can not only extract the feature information of each region of interest but also the topological structure information between regions of interest, that is, graph structure information. The proposed GCN model achieves an acceptable performance with an accuracy of 0.77 and an area under a curve of 0.81, which is higher than the previous studies on the same dataset. GCN model also outperforms several state-of-the-art methods trained at the same time. As far as we know, it is also the first time using the GCN model on this dataset for COPD detection. GRAPHICAL ABSTRACT: [Image: see text] Springer Berlin Heidelberg 2022-06-24 2022 /pmc/articles/PMC9244127/ /pubmed/35750976 http://dx.doi.org/10.1007/s11517-022-02589-x Text en © International Federation for Medical and Biological Engineering 2022 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Original Article Li, Zongli Huang, Kewu Liu, Ligong Zhang, Zuoqing Early detection of COPD based on graph convolutional network and small and weakly labeled data |
title | Early detection of COPD based on graph convolutional network and small and weakly labeled data |
title_full | Early detection of COPD based on graph convolutional network and small and weakly labeled data |
title_fullStr | Early detection of COPD based on graph convolutional network and small and weakly labeled data |
title_full_unstemmed | Early detection of COPD based on graph convolutional network and small and weakly labeled data |
title_short | Early detection of COPD based on graph convolutional network and small and weakly labeled data |
title_sort | early detection of copd based on graph convolutional network and small and weakly labeled data |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9244127/ https://www.ncbi.nlm.nih.gov/pubmed/35750976 http://dx.doi.org/10.1007/s11517-022-02589-x |
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