Cargando…
Probing Adaptation of Hydration and Protein Dynamics to Temperature
[Image: see text] Protein dynamics is strongly influenced by the surrounding environment and physiological conditions. Here we employ broadband megahertz-to-terahertz spectroscopy to explore the dynamics of water and myoglobin protein on an extended time scale from femto- to nanosecond. The dielectr...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9245114/ https://www.ncbi.nlm.nih.gov/pubmed/35785325 http://dx.doi.org/10.1021/acsomega.2c02843 |
_version_ | 1784738678975758336 |
---|---|
author | Doan, Luan C. Dahanayake, Jayangika N. Mitchell-Koch, Katie R. Singh, Abhishek K. Vinh, Nguyen Q. |
author_facet | Doan, Luan C. Dahanayake, Jayangika N. Mitchell-Koch, Katie R. Singh, Abhishek K. Vinh, Nguyen Q. |
author_sort | Doan, Luan C. |
collection | PubMed |
description | [Image: see text] Protein dynamics is strongly influenced by the surrounding environment and physiological conditions. Here we employ broadband megahertz-to-terahertz spectroscopy to explore the dynamics of water and myoglobin protein on an extended time scale from femto- to nanosecond. The dielectric spectra reveal several relaxations corresponding to the orientational polarization mechanism, including the dynamics of loosely bound, tightly bound, and bulk water, as well as collective vibrational modes of protein in an aqueous environment. The dynamics of loosely bound and bulk water follow non-Arrhenius behavior; however, the dynamics of water molecules in the tightly bound layer obeys the Arrhenius-type relation. Combining molecular simulations and effective-medium approximation, we have determined the number of water molecules in the tightly bound hydration layer and studied the dynamics of protein as a function of temperature. The results provide the important impact of water on the biochemical functions of proteins. |
format | Online Article Text |
id | pubmed-9245114 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-92451142022-07-01 Probing Adaptation of Hydration and Protein Dynamics to Temperature Doan, Luan C. Dahanayake, Jayangika N. Mitchell-Koch, Katie R. Singh, Abhishek K. Vinh, Nguyen Q. ACS Omega [Image: see text] Protein dynamics is strongly influenced by the surrounding environment and physiological conditions. Here we employ broadband megahertz-to-terahertz spectroscopy to explore the dynamics of water and myoglobin protein on an extended time scale from femto- to nanosecond. The dielectric spectra reveal several relaxations corresponding to the orientational polarization mechanism, including the dynamics of loosely bound, tightly bound, and bulk water, as well as collective vibrational modes of protein in an aqueous environment. The dynamics of loosely bound and bulk water follow non-Arrhenius behavior; however, the dynamics of water molecules in the tightly bound layer obeys the Arrhenius-type relation. Combining molecular simulations and effective-medium approximation, we have determined the number of water molecules in the tightly bound hydration layer and studied the dynamics of protein as a function of temperature. The results provide the important impact of water on the biochemical functions of proteins. American Chemical Society 2022-06-13 /pmc/articles/PMC9245114/ /pubmed/35785325 http://dx.doi.org/10.1021/acsomega.2c02843 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Doan, Luan C. Dahanayake, Jayangika N. Mitchell-Koch, Katie R. Singh, Abhishek K. Vinh, Nguyen Q. Probing Adaptation of Hydration and Protein Dynamics to Temperature |
title | Probing Adaptation of Hydration and Protein Dynamics
to Temperature |
title_full | Probing Adaptation of Hydration and Protein Dynamics
to Temperature |
title_fullStr | Probing Adaptation of Hydration and Protein Dynamics
to Temperature |
title_full_unstemmed | Probing Adaptation of Hydration and Protein Dynamics
to Temperature |
title_short | Probing Adaptation of Hydration and Protein Dynamics
to Temperature |
title_sort | probing adaptation of hydration and protein dynamics
to temperature |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9245114/ https://www.ncbi.nlm.nih.gov/pubmed/35785325 http://dx.doi.org/10.1021/acsomega.2c02843 |
work_keys_str_mv | AT doanluanc probingadaptationofhydrationandproteindynamicstotemperature AT dahanayakejayangikan probingadaptationofhydrationandproteindynamicstotemperature AT mitchellkochkatier probingadaptationofhydrationandproteindynamicstotemperature AT singhabhishekk probingadaptationofhydrationandproteindynamicstotemperature AT vinhnguyenq probingadaptationofhydrationandproteindynamicstotemperature |